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Detailed information on CNT30452338


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96499|RL44_GOSHI, E-value = 6e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694718Saccharum spontaneumOryza sativa49.1742.5595.48177forward
CNT30671781Saccharum spontaneumSetaria viridis38.0659.5789.05137forward
CNT30401984Saccharum spontaneumBeta vulgaris44.1777.5684.91159forward
CNT30298301Saccharum spontaneumTriticum aestivum24.1720.9193.187reverse complement
CNT3087688Saccharum spontaneumVigna radiata45.2875.4683.44163forward
CNT30244606Saccharum spontaneumAvena sativa16.6722.2296.6760forward
CNT30668197Saccharum spontaneumTriticum dicoccoides35.2858.5392.13127forward
CNT30311937Saccharum spontaneumCamelina sativa51.3978.0688.11185forward
CNT3078180Saccharum spontaneumBrassica juncea17.7827.3590.6264reverse complement
CNT30102486Saccharum spontaneumOryza rufipogon48.6166.7995.43175forward
CNT30604390Saccharum spontaneumOryza punctata17.2225.210062forward
CNT30175989Saccharum spontaneumVigna angularis49.4451.382.58178forward

Expression of CNT30452338

Peptides detected in this lncRNA

>peptide 1 (43 aa)
RKEMFPCPSCLHQSQNACTSVTQAFRIRSYLQIFMLASKQTKV*

Sequence

>CNT30452338
TTAGAAAAGAGATGTTCCCTTGCCCTTCTTGTCTCCACCAATCTCAAAATGCTTGCACCTCTGTGACACAGGCATTTAGAATTCGCAGTTATCTTCAGAT
ATTCATGCTAGCATCAAAACAGACAAAGGTATAAAGGATTGACAGATCGATGGTACAATCCATAGCTATGCTGCATTACCTTCTTGTGGAAGACAGGCTT
GGTCTGACCACCATATCCTGACTGCTTGCGGTCATAACGACGCTTTCCCTGGGCAGACAGGCTATCCTTACCCTTCTTGTACTGAGTCACCTTGTGGAGA
GTGTGCTTCTTGCACTCCTTGTTCTTGCAGTAGGTCTTCTTGGTCTTGGGAACGTTCACC