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Detailed information on CNT30452219


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6AVI0|RSLE2_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONORUT003941, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30362965Saccharum spontaneumSorghum bicolor81.6793.4195.982664forward
CNT30596250Saccharum spontaneumOryza meridionalis34.065583.621111forward
CNT30107897Saccharum spontaneumOryza longistaminata58.4381.8785.621906forward
CNT30100657Saccharum spontaneumOryza rufipogon58.4370.8885.361906forward
CNT30576541Saccharum spontaneumOryza barthii58.4360.6685.831906forward
CNT30580242Saccharum spontaneumEchinochloa crusgalli68.6486.5890.892239forward
CNT30557998Saccharum spontaneumPanicum hallii40.9954.0489.751337forward

Expression of CNT30452219

Peptides detected in this lncRNA

>peptide 1 (41 aa)
LKYAFPITPIFLPAQQTTKNLQNPLTHKFPQSYLNKPYVRN*

>peptide 2 (33 aa)
MEPLMQSSLHDRQLKHKHSSHSVKLAIGSTHLN*

>peptide 3 (32 aa)
MGIAPHNKELSLKHEIVLVGEMIPQICTVDIM*

>peptide 4 (29 aa)
MAMVKSEHSRSTKMAGIQLLSITEPTNTS*

>peptide 5 (42 aa)
MTTAMANTRLQSFQYLSNLSCISLAMLLKVGSSCPVPFASSS*

>peptide 6 (75 aa)
MDIGMAKISRAILERVGNFTVFSFHQFRISNSWIRGVRDSSRYCSNSDFEGWLLWISERYISKSRSPSPVEAGSP*

>peptide 7 (60 aa)
MTTARVEFQQSSTQVTHLNEINTRIDHNQFTISAYNTPTVNYTHRYDRWINRFLLPQGRQ*

>peptide 8 (46 aa)
MQNSVPRWQVVNTGASLLRRQVLPQSQVGESFCSHRACDFLFQQRI*

Sequence

>CNT30452219
CCCTGAAATATGCATTCCCCATAACACCTATATTTCTGCCCGCCCAACAGACAACCAAGAACCTTCAAAACCCCCTTACACATAAATTCCCACAAAGTTA
TCTCAACAAGCCTTATGTGCGAAACTAACTCAAAGATCAGTCAGCACTTACCTAAGAAGATAAAATTCTGTTGAAATCCTCATATTCTTTCTCAATATTT
CTCAAAGCACCTGATGGAGCCACTCATGCAGTCATCACTCCACGACAGGCAGCTCAAACACAAACACAGCAGTCATTCAGTAAAACTGGCCATAGGGAGC
ACACACTTAAATTAGACAATTTCTACAGCTATACACAAACATGGACACCAATCTACGGTACAAAACAAATTGAATCCAAAACGGGGGTTCAAACAAAATA
CACAGCAACCAGCTGATGCATCCCATGGCTTGTACACGCACATAGCCAAGCAAGCAAACTCCAACATCAGACAATACGAGAACATGATACATAAGCTATT
ACATGACAACAGCGAGAGTAGAGTTTCAGCAGAGTTCAACACAAGTTACACACCTTAACGAGATAAATACCAGAATAGATCACAATCAGTTCACAATCTC
AGCCTACAATACACCTACAGTTAACTACACTCATAGATACGACAGATGGATAAATAGATTCTTGCTTCCACAAGGCAGGCAGTGACCAGTGACGACGACA
AACCTACGATCCTTCAGCCTTCACCAATGCAGAATTCGGTGCCTCGGTGGCAGGTGGTGAATACTGGAGCCAGTCTTTTGCGCAGACAAGTGCTTCCACA
ATCTCAGGTCGGAGAGAGCTTCTGTAGTCATCGAGCATGTGACTTCCTGTTCCAGCAGAGAATATAGAGCTGCCACTGCTTACCATGGACATTGGAATGG
CCAAGATATCACGGGCCATTTTAGAGAGGGTTGGAAACTTTACTGTGTTTAGCTTCCACCAGTTCAGGATATCAAACTCCTGGATACGTGGAGTGAGGGA
TTCATCCAGGTACTGTTCCAACTCAGATTTCGAGGGCTGGCTACTTTGGATCTCAGAAAGGTACATATCGAAGTCAAGAAGCCCATCACCAGTGGAAGCA
GGCAGCCCCTGACTGTTATTCACATTGGCTGGTCCATTATTCCCTTCACCTTGCTCAACATAGGCTGGGGTCAGTGGGAGTGGCTGAGCCACATACTCCT
TATACAGCTCATGTACAGCATCATTGACCACCTTAACATACTTTGCGGCCTCAGCCCCATAAATTTTTGAGTAACTGAACTCAACAAGCTTCATCTTGAA
ACGTGGATCCATGACAACAGCAATGGCTAACACGAGGCTGCAATCTTTCCAGTACTTGTCAAACCTCTCATGCATATCCTTGGCGATGCTACTGAAAGTG
GGATCTTCATGTCCTGTGCCATTTGCTAGCTCTAGCTGAAGTTTCCAGGCTTCATGGAAAAAGATGTTTGCAGTTGGGTTTGCTGCTGCCATGATGCTAT
GTGCAGAATCGTATAGCAGTTTCAGGTAATTACAGGCAGCCTCAACTTTCTTCCAATCCTCTGCTGATGGAGCTTCATTGTAGTTATCATCACATGTTTC
TAGTGTAGTGAAAGTCTGCTTATAATCCAAGGCAGCTAACAACATCAGATAAGTGGTGTTCCACTGGGTTGTAACATCCAGACAAAGGGTCTTGGTACTG
GGAATCTCCAGCTGCAGAGCAATCTCGGCAAACTTCTCTTCACGGGCAGAAGAAGCTTTTATGAACTTTATGCTTTCACGGATACTGTATACAACACCAT
GAATTGAAGCAATGACATCCTGTGCAACAGCATTAAGGATATGGGCATAGCACCTCACAACAAAGAGCTGTCCCTTAAGCATGAGATTGTTCTTGTTGGA
GAGATGATCCCTCAAATTTGCACTGTAGATATCATGTGAGGAGCATTCATTATCCAATGTGATGGTGAATAGCTTGTCCTTCATATTCCAGTCAGAGAGG
CTCAAGCTAATTGCCTCACTAAGTGCATTCTCTGAATGAGGAGATGACACCATCATGAAGTTAAGCATCCTTCGGTGCATTTTCCACTCGGAGTCGATAA
ACTGCCCTGCAAGTGAAACATACCCAAGAGTCTGACTAGTTGTCCACAATCCTATAGTGAGACTGATCCTTCCAGGCATAGTGCTGAATGATTGAAGCAG
GTTCTCCTTTTCTTTCTGATAAACAGCATACACCTCTCCTTCCATCGTATCAACATCCACAATCTTGAAACGTGGCTGCAGACTTTCAATAAAGATGGAA
AATGCCGGCTGTTGGACAATGTGAAGTGGGTAGTCATGCTGAATGATCATCTTTGCCAAGTATGAGCAACTGCGGTCCTGATCAAAAGCAGCATTTGCAT
AACCAGTATATCTGTAGCGTCTCTTAGTTGGGCGCTCTATAGTTCCCTCACCATCAATGTCAGTCCCTCCAGTTGAAGGCAGTGACAGCCTCTGCTCTTG
ATTCTTTATCTTAGGACAAGAGCCCAAAGTGATGTGCCTCTTGAGATGACTAGTCCCAGCAATCTTTGAACCAGAGCTGTAAGCAAAGGTTTGCTTGCAG
AGCTTGCAGCAGGCCCTTGTTGCCCCACCGGCGACGGCTTCAATAGTGAAGTGCTCCCATACCAAGGACTTCTTTCTCCTACGTCTGGTTCCAGTAGTAG
GAGGGGTCGTTACCTCAGAAACAACCAACTCATTTCCTTGAACCAAATCATCACCTTGGGACAGCTCTTCACCATGAACCAACTCTTCGCCTTGGACCAA
CTCATCGCCTTGAGCTAATTCTTCACCTTGGACCAATTCATCACCTTGGATTGCCTCATTGCAGGGGGCAATCTCGTTATCTTGTGCCACCTGAGTGTCA
TTGGCAGTTTCCTCGGCCATCCTGACAGGCTAGCAGCTAATGAACTTCTGAGATCTGTCAGATATGGCAATGGTAAAATCAGAACATAGTCGAAGCACGA
AAATGGCAGGGATTCAATTGCTGAGCATAACAGAACCGACAAATACATCATAATTTCACGATAGAAAGTCCTAGTAATCAAAGGAACTAGCGCACAACCC
CAAAGAATAAGTTGTATTAACAACTACGCACTAAATTACTTCCTCAACAGCCCAGATTCTTGCACAGGCTCATAAATCACCAAAAAAAATCCTATACTTT
ATTTTCCTTGTTTAGACAAAATTTAAAAGCCCCCCACAGATCCGGCGGAATCTAGCCCAAAC