Detailed information on CNT3045209


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9THV5|RPOC2_SINAL, E-value = 2e-13

BLAST vs NONCODE:
NONMEST003253, E-value = 6e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703171Prunus dulcisQuercus lobata70.691.7293.17205reverse complement
CNT30220823Prunus dulcisHordeum vulgare302.7590.887reverse complement
CNT3085458Prunus dulcisVigna radiata41.3833.990.83120reverse complement
CNT30541456Prunus dulcisBrassica napus33.7911.0289.898reverse complement
CNT30234601Prunus dulcisBrassica oleracea37.2422.9393.52108reverse complement
CNT30314046Prunus dulcisCamelina sativa63.454.891.3184reverse complement
CNT3082978Prunus dulcisBrassica juncea58.972.1192.4171reverse complement
CNT30142437Prunus dulcisLolium perenne26.214.0190.7976reverse complement
CNT30155137Prunus dulcisPrunus persica94.8339.9197.45275reverse complement

Expression of CNT3045209

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAEWANLVFHNKVIDGTAIKRLIRRLIDHFG

Sequence

>CNT3045209
AAGGGTTTTGCCGAGCCTACTCATATGGTATCTAAACGAAGTAATTCTATGACACCCGTGTAAGTTTGGGTTTCCGCAGTTCACCTAGGACCATAGTTAC
TGAATTTCTATGCGAATAAAGATCGAGAAAATGAAGTTTTCCAATCATTGGCTCAAACCCATTGTCGAACCCCACTCAGCGGAATAGGGAGGTACTTATG
GCAGAATGGGCCAATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCTATTAAACGACTTATTAGGAGATTAATAGATCACTTCGGA