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Detailed information on CNT30451774


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ZBP3|H2B2_ORYSJ, E-value = 2e-55

BLAST vs NONCODE:
NONORUT000045, E-value = 2e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381273Saccharum spontaneumManihot esculenta14.9736.9784.09132forward
CNT30196132Saccharum spontaneumPisum sativum13.8325.7487.7122forward
CNT3086649Saccharum spontaneumVigna radiata29.5934.9982.76261forward
CNT30244799Saccharum spontaneumAvena sativa52.3864.3591.13462forward
CNT3015998Saccharum spontaneumZea mays25.7458.8192.51227forward
CNT30205622Saccharum spontaneumHelianthus annuus8.7328.5287.0177forward
CNT30557628Saccharum spontaneumPanicum hallii42.0666.6195.42371forward

Expression of CNT30451774

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMMDMALDEMPMSGCTCFSTLKM*

Sequence

>CNT30451774
AGGAAAATGAATAAGGAAAGTAAGAACAAGCAAATCCATTTCTGATATTTTAAGCACTACAGATTTCACGTTTCAATGCACCCACAGAAATTTCAAGTAT
CAAACTTGTTTCCACACATAATTAGCAGCTCACTGCCGGGCACAGTTCTGCAGTAAGACCATCCATCATCCTCATATAAATATAAATACTAATAACATGT
AGAGCAAGCACCGAGTGTTCTGGAAACATCATCGCAATTCTTAACAACTCAATTACACGCAGATCATCATCATCCATCGCTAGCCCTACCAGATAAACTG
AGCCACGTCTACCACAACCACCCAACCATTACTACTACGAACCTAAGAAGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCG
AGCTCGCCGGGGAGGACGAGGCGCACCGAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGCGCCAGCTTGGCGGCCTCGCCCGCAA
GCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGACGAGATGCCGATGTCGGGGTGCACCTGCTTCAGCACCTTGAAGATGTA
GATCTTGTAGGTCTCCACGGACTTCTTCGCCTTCTTTTTCCCCTTCTTGCCCTCGCCGCCCTCCTTGCCGGCAGACTTGCCCGCCGGGAGGCGCTTCTCG
GCCTTGGGCTTCTTCCCCGCCGGGGCCTTCTCCGCCTTCTCGGTCGCGGGCTCCTCCGCGGGCTTCTTGGCCGCCGGCTTCTTCTCCGCCTTGGGTGCCA
TCGATGCGGCTGCGGGAGGGAGGTCGCGGTGGTGAGAGGCTGTGGTGAATTTGCTCGGTCGATTTGGGGACGGAAGATTTCG