« Back to Saccharum spontaneum search


Detailed information on CNT30451717


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225132Saccharum spontaneumHordeum vulgare17.5938.287.6489forward

Expression of CNT30451717

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MLILLPSVTKSEGHIIYKRRRARGCKVNSVLSHLLLYRSIVTSP*

>peptide 2 (52 aa)
MGFVLQFHFHPKCINTLIWSRIIGRTDRLLPAFTSEQDNKTSRIRCLSYCLR*

>peptide 3 (33 aa)
SSGALTHSVKALDISLKIDTELALQVGRRTNRA*

Sequence

>CNT30451717
TTCCAGTGGAGCATTAACGCATTCTGTGAAGGCACTTGACATCTCTCTCAAGATAGACACCGAGCTCGCTCTTCAGGTTGGAAGACGTACAAATCGTGCT
TGACTCCACCGCATTACGATTGTACACGCATTGCCACATATGCAAGATGATAGAGAGACCAGCGTGGCAAATAAGCTTAAATAACTTAGCGTGGCGCTGA
GACCTCTGACTGCAACTACATGGGATTCGTTCTTCAGTTTCATTTTCATCCAAAATGCATAAATACCTTAATTTGGAGCAGAATAATTGGCAGGACAGAC
AGGTTGCTTCCAGCATTTACAAGCGAACAGGATAACAAAACATCGAGAATAAGATGCTTATCTTACTGCCTTCGGTGACAAAAAGCGAGGGCCATATAAT
TTATAAAAGAAGAAGAGCAAGAGGTTGCAAGGTCAACTCTGTACTTTCACATCTATTATTGTATCGTTCCATCGTCACTTCACCGTAATGTGCGTTCTCA
TGCCCC