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Detailed information on CNT30451514


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SIP1|UP3_ARATH, E-value = 7e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596636Saccharum spontaneumOryza meridionalis3.7432.0287.6965forward
CNT30102326Saccharum spontaneumOryza rufipogon8.0635.6292.86140forward

Expression of CNT30451514

Peptides detected in this lncRNA

>peptide 1 (40 aa)
WKLELRLNLKPLRSSDNAGTSLAGGQMMKSSTKYIQQTLR*

>peptide 2 (41 aa)
MAAAAEAEAATRREEVGVRRRRVGRWRGDEKALRQIMVRSA*

>peptide 3 (31 aa)
MPNRPNNSILNQGKQFLFIALSFPISQLDKL*

>peptide 4 (35 aa)
MVIANASRFTMVIYFSHNHIYNQMKWHGRTSFIIE*

>peptide 5 (43 aa)
MTCLNIIYYVISRVYSYKVILQIMSAGAAIDSAVSLYQSVYFA*

Sequence

>CNT30451514
TGGAAGTTGGAACTGAGATTGAACCTGAAACCTCTTAGAAGCTCGGACAACGCTGGAACCTCTCTGGCAGGTGGCCAGATGATGAAGTCCAGCACCAAAT
ATATACAGCAGACACTCAGATGACATGACTTGGTTAAACATATTTATTCTGAAACGAAATGACCTGTCTAAACATTATTTATTATGTTATCAGTAGAGTG
TATAGTTATAAAGTTATACTACAAATTATGAGTGCAGGTGCAGCTATAGATTCAGCAGTGTCACTGTATCAGTCAGTTTACTTTGCATAATATTCTGGGT
TTCTCCAAAAGAATTAAGGGAACTGCAGTACGATCATCCCATTACCAATGGTGATTGCAAATGCCTCGAGGTTTACAATGGTGATTTACTTTTCACATAA
CCATATATACAATCAAATGAAATGGCATGGCAGAACATCATTTATAATTGAATAAGCAGACTAGCAGAGTGCACTTGGATTGAAAGAGTGAAGATTGTGC
CACACATATCACTGATTCCTCAATCCGTGTTAGGCAAACCTTAATTAAGGAGCTCTCGAGAGCTGTAAATGCCAAACAGGCCTAATAATTCGATCCTTAA
TCAAGGGAAGCAATTCTTATTCATTGCACTGTCATTCCCAATTTCACAACTTGACAAACTATAAGGAGTCTATCAATCCATCCATCCATCCATCCATTAT
TCCGAAATCAACAACACACTCAGAATCCCGAAACTGAGAACCTGAAACCTGTAATCAGAGGCTCGCAGGCGTCGGAGCATCTCCGACGACGAAGTCCAGA
ACCATCACCTCGCCCAGCAGTGGCCTGACCGCGGCCTTGGCCTCCTCAACCTTGCCGTCCCCCTCCACGGCGTCCAGCTCCTCCACGCTGTCGAACACCG
CCACCATCCCGAACTGGTACCCCTTAGCCCGCGCGGGGGAGAAGTTCTCCCCGAAGCTCACCTTGGCGCCCTTGGCGTCCCCGGCGGCCTTGGTCACCGC
GGCCACTTTCTCAACGAGCTGCGCGACCTCCACCCCTGCCTTCACCTTGGCCAGCGTGAGGCGCACGGCGCTGCCGGAGGCCGCGGGGGACGGGAGCGGC
GCGGCGTTGACCCAGTCGACGGCGGTGATGTCGAGCACGTTGGGGAGGGCGTGGACCTGCACGGCGGCCACGTGCGCCGGGTGCGTCGCGTAGGACACCA
GGTCCTCCTTGGTGGCGTAGCGGGAGTGGAGGAGGTGCGTGGGGCCCAGTGCCTCCGCGGCCGGGGACCGGAGGCGGAGCACCGGCCCCGCGTGGATGTA
GGCCAGCCCCGGGACGGCCGTGGCGAGCGCCTGCAGAGAGGAGATCATCGCCGCCGTGGCGCCCGAGGCCACCGCCTCCGGGCGGGCCTTGAAGAGCACG
AAGTGCTCGATCGGGGTGGCGACTGCGGAGGAGGACGACATGGCGGCGGCGGCGGAGGCGGAGGCGGCGACGCGGAGGGAGGAGGTGGGGGTGAGACGGC
GGAGGGTCGGGAGGTGGAGAGGGGATGAGAAGGCTTTGAGGCAAATCATGGTTAGGTCAGCGTGACAGCGGGGAGGGTTAAAGATGCAGAGCGCGCCGGC
CGGTGGTTTAGTGAGAGACAGTGACCTGACGAGGCTGGGAATGGGTATCCCCCGTCTCCGGAGCTGAGATGCGAGTTGGTGTTGGATTCTATAAAAATGG
TGAGCTCGCTTGGCACGGGGCGGCGGCGCAGATGGT