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Detailed information on CNT3045136


BLAST search results

BLAST vs Swiss-Prot:
sp|P51086|CHS4_TRISU, E-value = 1e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Prunus dulcisQuercus lobata22.9933.9783.22143forward
CNT30378024Prunus dulcisArabidopsis thaliana25.2428.4982.8157forward
CNT30281985Prunus dulcisChenopodium quinoa58.3615.2179.89363forward
CNT30381286Prunus dulcisManihot esculenta20.116.5183.2125forward
CNT30628839Prunus dulcisVigna unguiculata46.7825.5982.82291forward
CNT30195402Prunus dulcisPisum sativum59.8125.580.65372forward
CNT30507146Prunus dulcisNicotiana attenuata64.3137.5982400forward
CNT3096581Prunus dulcisSolanum tuberosum60.9320.2984.17379forward
CNT30192407Prunus dulcisSecale cereale31.1929.0479.9194forward
CNT30564019Prunus dulcisActinidia chinensis54.1845.4885.46337forward
CNT3087878Prunus dulcisVigna radiata72.1928.7380.18449forward
CNT30171320Prunus dulcisTrifolium pratense63.9992.9979.15398forward
CNT30145784Prunus dulcisMedicago truncatula31.6718.1781.22197forward
CNT3074040Prunus dulcisBrassica juncea20.5828.9681.25128forward
CNT30466546Prunus dulcisSaccharum spontaneum22.1951.8884.06138forward
CNT30610059Prunus dulcisGossypium raimondii83.9276.4385.25522forward
CNT30647274Prunus dulcisRosa chinensis81.0328.9888.1504forward
CNT30680228Prunus dulcisTriticum urartu24.4432.280.92152forward
CNT30365392Prunus dulcisSorghum bicolor31.1933.4581.96194forward
CNT30355776Prunus dulcisLactuca sativa46.625082.76290forward
CNT30705527Prunus dulcisPrunus avium42.7757.4595.49266forward
CNT30644974Prunus dulcisCannabis sativa58.8445.5880.33366forward
CNT3022840Prunus dulcisPopulus trichocarpa58.0437.0681.99361forward
CNT30103826Prunus dulcisOryza rufipogon22.1919.9783.33138forward
CNT30114123Prunus dulcisFicus carica86.1733.3583.02536forward

Expression of CNT3045136

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MSTPLVVQKTKWVILDLGWPHSLMALVAASLPSFGISTTTMSCLASREGAMYSHILGFSFRMSSVKYM*

>peptide 2 (94 aa)
KGFSISGIGSAPTIIAAAPSPNKAWPTKLSRWVSLGPRKVTAVISEHTTRTRAPLLFSAKSLANRSTVPPAKHPCWYIMRRLTDGRRPKSLVSW*

>peptide 3 (67 aa)
MGNFGLGLAPFLNGLGGSFFAKFWNFNNHHVLPGIKGRGHVLTHTWVLFQNVFSQVHVTLLDHRFVA*

Sequence

>CNT3045136
AAGGGCTTCTCGATCTCGGGAATTGGGTCCGCACCCACAATAATAGCTGCTGCACCATCACCGAATAAGGCCTGGCCCACTAAACTGTCAAGGTGGGTGT
CACTGGGCCCACGGAAGGTGACCGCTGTGATCTCCGAGCACACAACGAGAACACGGGCACCCCTGTTGTTCTCGGCCAAGTCCTTGGCCAACCGGAGCAC
AGTGCCGCCGGCAAAACACCCTTGTTGGTACATCATGAGGCGCTTGACGGACGGGCGGAGGCCCAAGAGCTTAGTGAGCTGGTAGTCGGCCCCAGGCATG
TCCACACCACTAGTGGTGCAAAAGACCAAATGGGTAATTTTGGACTTGGGCTGGCCCCATTCCTTAATGGCCTTGGTGGCAGCTTCTTTGCCAAGTTTTG
GAATTTCAACAACCACCATGTCCTGCCTGGCATCAAGGGAAGGGGCCATGTACTCACACATACTTGGGTTCTCTTTCAGAATGTCTTCAGTCAAGTACAT
GTAACGCTTCTTGATCATAGATTTGTCGCCTGAAAAAAGCATAAAACAGAACAGTTACACTTGTCTTGAGGATTGCGCATGACTATGATTTATAATTAAT
TTGTTTGTGGCTTTAAAATGGC