« Back to Saccharum spontaneum search


Detailed information on CNT30450733


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697494Saccharum spontaneumOryza sativa21.4316.3991.6760forward
CNT30555645Saccharum spontaneumOryza glaberrima21.4311.6591.6760forward
CNT30371486Saccharum spontaneumOryza glumipatula21.4312.0791.6760forward
CNT30106587Saccharum spontaneumOryza longistaminata21.4315.4691.6760forward
CNT30104741Saccharum spontaneumOryza rufipogon21.4318.1891.6760forward
CNT30496705Saccharum spontaneumDigitaria exilis27.1420.8293.4276forward
CNT30604867Saccharum spontaneumOryza punctata21.4315.7193.3360forward
CNT30557192Saccharum spontaneumPanicum hallii27.8618.493.5978forward

Expression of CNT30450733

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MHGAEDEDEHSTNNNIEGASLRSKTQMGNNNNKHEHTDTTTTTNNKINPALDNTVAVANKITWPRGPHRSVPPVSLGVAVPAAAA

Sequence

>CNT30450733
CCAGGCCCAGTTCATGCTGATTGATGCACGGGGCCGAAGACGAGGACGAACACAGCACTAACAACAACATCGAAGGAGCGAGCTTGCGATCAAAAACACA
GATGGGCAACAACAACAACAAACACGAACACACAGACACGACGACAACGACGAACAACAAGATAAACCCCGCTCTGGACAACACAGTAGCAGTAGCGAAC
AAGATAACTTGGCCGCGCGGGCCCCACCGCTCAGTTCCTCCAGTTTCCCTCGGAGTTGCCGTACCCGCCGCCGCGGCTGC