Detailed information on CNT30450190


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FLM8|NRPBC_ARATH, E-value = 7e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3013371Saccharum spontaneumZea mays36.2248.5389.29280forward

Expression of CNT30450190

Peptides detected in this lncRNA

>peptide 1 (46 aa)
GRRPRSGLLLLAARVVVFRSAHGDGWEETPKPPSTSPPRTTCRRKP*

>peptide 2 (45 aa)
MPVLFVDHLFAAYDPKIMGVEQWYLFIRLEYCLCPCAVDHPFIQN*

>peptide 3 (96 aa)
AAAAFRATTSCRSCGRVPFRTRRRLGRNPQTPLYLSSTDHLPPETLECPTHGSAAAGARQLPLRSPEMSSSAVSVATASSTRSAPAGLSNMKRAEE*

>peptide 4 (69 aa)
MIQKSWVLSSGIYLYGWNIACVLVPSIIHSFRTDENYVTGFRTDENYVTGCDSVVSYMLVLLLYFCMYID

>peptide 5 (94 aa)
GGGRVPGYYFLPLVWSCSVPHTATAGKKPPNPPLPLLHGPPAAGNPRVPDPWIRSSRSPSATSAEPGDVIQCRECGYRILYKKRTRRIVQYEAR*

Sequence

>CNT30450190
GGGCGGCGGCCGCGTTCCGGGCTACTACTTCTTGCCGCTCGTGTGGTCGTGTTCCGTTCCGCACACGGCGACGGCTGGGAAGAAACCCCCAAACCCCCCT
CTACCTCTCCTCCACGGACCACCTGCCGCCGGAAACCCTAGAGTGCCCGACCCATGGATCCGCAGCAGCCGGAGCCCGTCAGCTACCTCTGCGGAGCCCG
GAGATGTCATCCAGTGCCGTGAGTGTGGCTACCGCATCCTCTACAAGAAGCGCACCCGCCGGATTGTCCAATATGAAGCGCGCTGAAGAGTGAAGACAAG
GGAAAACACTGAAGATGGTTGATCTATTACTCGCCACTTTATTACCTATGTAAAGAGTCTTGTGTGGGAAATGAAAATGTTATACATAATGTTTGATGAA
TGGCGTGTGCCTCCTTTGGACTTGAGCTTTAATCTGTAACGCTTGAACTGGGGACTGATTTGAGAATGGAGATGCTGCTGTAATATGTTGATGGGTCCTA
AGTGGCGAATCTAATGCACGCGTGTTATGCCTGTGTTATTTGTTGACCATTTGTTTGCCGCCTATGATCCAAAAATCATGGGTGTTGAGCAGTGGTATCT
ATTTATACGGCTGGAATATTGCTTGTGTCCTTGTGCCGTCGATCATCCATTCATTCAGAACTGATGAAAACTATGTGACGGGGTTCAGAACTGATGAAAA
CTATGTGACGGGGTGTGATTCAGTTGTATCTTATATGCTTGTATTGTTACTCTATTTTTGCATGTACATTGAC