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Detailed information on CNT30450175


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371424Saccharum spontaneumOryza glumipatula36.7933.6680.67238forward
CNT30104402Saccharum spontaneumOryza rufipogon22.4126.783.45145forward

Expression of CNT30450175

Peptides detected in this lncRNA

>peptide 1 (80 aa)
AYKHTRRDDTSDTTSYKHMRSHKRHTTHVATRKRTYSLDKTRVRGERTWHCRPDTWQRSQRRLLVPHTQSVPPFNSNTRA*

>peptide 2 (88 aa)
MRPGSPAAAAAFTMADWQKTTLSSPGAKHRCGTGSTSVAVVRVSGHRSLKYPAGPLHATTPPPAPTTRCDGGHPALRSAAHPRAGHCPP

>peptide 3 (36 aa)
MSQLENVHTHLTRQEYVVNALGTAGRTLGNEANDDY*

Sequence

>CNT30450175
TGCCTACAAACACACGAGACGAGACGACACATCTGACACTACTTCCTACAAACACATGAGATCGCACAAGAGACACACGACACATGTCGCAACTCGAAAA
CGTACATACTCACTTGACAAGACAAGAGTACGTGGTGAACGCACTTGGCACTGCCGGCCGGACACTTGGCAACGAAGCCAACGACGACTACTAGTACCAC
ACACACAGTCTGTGCCTCCGTTCAACAGTAACACACGCGCTTAATTACCTAGTTAATCTACCTTTATTACGCAGCGCACTAATCAGAGGGCGGCATCCTC
CCTTCAACTGACCAGTGACCACCGGCCGGCGGCTAGCACAGGTAGCTAGCTCTAGTTGTCCGCGACGACGACGGTGCGGATGCGCCCAGGCTCGCCGGCG
GCGGCGGCGGCGTTCACCATGGCGGACTGGCAGAAGACGACCTTGAGCTCGCCGGGCGCGAAGCACCGCTGCGGCACGGGCTCCACGTCGGTAGCCGTGG
TGCGCGTCAGCGGGCACCGCTCCTTGAAGTATCCCGCGGGGCCCTTGCACGCCACCACGCCGCCCCCTGCCCCAACCACGCGCTGCGATGGCGGGCACCC
GGCGTTGAGGTCCGCGGCGCACCCCAGGGCCGGGCACTGCCCACCGC