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Detailed information on CNT30450174


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 2e-130

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522168Saccharum spontaneumSetaria italica64.5260.9686.25531forward
CNT3013167Saccharum spontaneumZea mays66.5970.8997.45548forward

Expression of CNT30450174

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MAWTKKPNMENMARRPFLISLTLSSAKVTGSSARPNGMTWNPSTARMLCACTRLGLPR*

>peptide 2 (36 aa)
MQPSAPSIAHRPWITSSALFRAKASGSADSPAVSQP*

>peptide 3 (43 aa)
MSMHAAVSGYLKTLARTWWRRPRRCWRRGRRGGRAGSRGAPCR*

Sequence

>CNT30450174
CTACTTCCGGACAGCTTGTGTTTGTAAGAAAAATAGTAGACACAACTACATATATGGACACACCACACACCGAATCAGTTAACAACTAAAACGGAGCAGA
TGGAATTGAAGACCAAAACTAGTCCAGTACGTTTCTGAGTTCTGAGAGAGCACAAGGATATTTGCATTCGTTCATGGTACAAATGTAATGTCACAACACA
AACGAGTAGTCTACAATGTCCATGCACGCCGCCGTGTCCGGCTACCTTAAGACCCTGGCGCGAACTTGGTGGCGTAGACCCAGGCGTTGTTGGCGACGGG
GTCGTCGAGGTGGTCGAGCAGGTTCTCGAGGGGCCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTC
TTGATCTCCTTGACCTTGAGCTCGGCGAAGGTGACGGGGTCGTCGGCGAGGCCCAACGGGATGACCTGGAACCCCAGCACGGCGAGGATGCTCTGCGCGT
GCACCAGGTTGGGGTTGCCGAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACGGGCTCCTTGAAGTCCACGCGCACCCA
CTTCTCCAGCACCTCCGGGGTGATGCAGCCCAGCGCCCCCAGCATCGCCCACCGCCCGTGGATCACCTCCAGCGCCCTGTTCCGCGCGAAAGCCTCCGGG
TCCGCCGACAGCCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGGACGGCGTCTGCGCGGAGAAGGGGCCCAGGTACTTGACGC
GGTCCGGGCCGTACCACAGGTCG