« Back to Saccharum spontaneum search


Detailed information on CNT30450155


BLAST search results

BLAST vs Swiss-Prot:
sp|O65665|ERF60_ARATH, E-value = 5e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Saccharum spontaneumOryza sativa18.4724.9289.97389forward
CNT30580750Saccharum spontaneumEchinochloa crusgalli33.3338.6189.74702forward
CNT30496207Saccharum spontaneumDigitaria exilis34.4732.6489.26726forward

Expression of CNT30450155

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MKKLAEPNSHSKNRWHWWVDLLSRNLLAQVRCGIRTPLGYQPTSNLVDY*

>peptide 2 (70 aa)
MRGSSELYLRRARTRSDLSLPRSNSLETVVGGRWIGGGFGCGRGAGERTRWLVGVLVGRGGGKGARGALL*

>peptide 3 (30 aa)
LGHRLFIQPTYNSSTNNSSSSNYNSLTQLG*

>peptide 4 (46 aa)
MGWARGPSTEDCGDWRCRWRRAWMYCIWAGLSWPAPSAAAANGYPP*

>peptide 5 (29 aa)
MALVGRSAQQELTCTSEVWNKNPSWLPTY*

Sequence

>CNT30450155
CTCGGACACAGATTGTTTATACAACCAACATATAATAGTAGCACTAACAATAGCAGTTCATCAAATTACAACTCCTTGACACAGCTAGGCTGATTTTACA
ACATACGGAGTACTACTACTTAATTAATATCACATCACACCGTGCTGTTCTTACAACCTGTAGAGCAGCACCATCTTCTAGCAAGAAACAGCTACCAGAA
CAATGGACACCTGAACGGCCGGGGTCACTGACCAGTGACCGACCGACCGACCACCGGAGACGCCGGACACAAAAACGCCGGCTTCCCATCGGTTCGGTTG
TGGTTCTCTCCTCCGGGAACCAAACCCTAAATAACATAAGAGATCTACAACTGACTGACCGGTGACAGCAACAAAAACGAATTGAACATCTACACAAAAC
GAACGAACGGGATTAGCACTAATAATCCACTAGTGCCCGCGCAGGATGTCTAAAATCCCATCTGCGCGACGGCCGTTAACCTTAACCCTCTGCTGCAGTC
TGCAGTAGTAGTCGGAAGGAGCCAAGAAGAACAACAATGTCGGTCGGTGGTTAATTGGCGGCGAGGAGGGAGTCCCAGTCGATCTCGTACGACGGGTACT
TGGTGAGCGCGAAGCCGGCGGCCTCGTCCCACGGCGCCTCGCTGAAGTCCAGCTGCTGCATCTCCGGCACCGTCGACGACTCGGGGGAGGCGGACGGCGA
CGGGGACGGGCACGAGGACTCGGCGGCGGACTCGAGGCAGGACGAGGACGCGTCGTCGGAGGACGGCGAGGAGGAGCAGTTGCTGGTGGGGGCGGACGAC
GACGTGGCAGCTGCGGCGGCGGAGGCGGGCTTCTTGGCGCCCTTCTTGGACGCGGCGATGTTCTGGCAGAGCGTCTGGAGCTTGGCGTCGACGGAGGCGT
GAAGCGGGCCGCGGGAGGCGGCGTTGTCGGGGAAGTTGAGGCGCGCCGCGTCGCCGCGGAGGCGGTAGGCGGCCTGGTCGTAGGCGAGCGCCGCCTCCTC
GGCGGTGTCGAAGGTGCCGAGCCAGAGGCGGGTGCGGTTCCGCGGGAGGCGGATCTCGGCGACCCACTTGCCCCAGTGCCGCTGCCGCACGCCGCGGTAC
AGCTTCTGCGGCCGCGGCGGGGTCGGGGCCGCCGCCGCGGACGCCTTCATGGGCTGGGCCCGCGGGCCCAGCACGGAGGACTGCGGCGACTGGCGCTGCA
GGTGGAGGCGGGCCTGGATGTACTGCATCTGGGCTGGGCTCAGCTGGCCCGCCCCCTCGGCCGCGGCGGCGAACGGGTACCCGCCGTAGGCGGCTGCGGC
GGCGACTTGGTGGAAGGAGAACGGCGACGAGGGACTGAGAGGCTGGTGGGTGTGGAGGAGCGGACTGGATCCGTGAGGAGGAGAGGAGGCATCCTGGATA
AAAGGCTCGAGTGCTCTCATCAGCTCCTCCCCTGACAGATCTATAGCGGCGGCCATCTAGACTGTTTTTTTTTTGTTTTTTTTTCTCTAGCAAACCAAGA
ACAAAATGAAGAAACTGGCAGAACCCAACAGCCACAGTAAAAACAGATGGCACTGGTGGGTAGATCTGCTCAGCAGGAACTTACTTGCACAAGTGAGGTG
TGGAATAAGAACCCCTCTTGGCTACCAACCTACTAGCAACCTAGTGGACTACTAAAACCAAACCGACGAAGAAATAGCAGATCTGAAGCCCAGGATCTAA
AAGGCCCCGGGTCTCTCGTTGTCTGCTCGAGGAAGACGAAAACAGAGCAAGGAGATGAGATTAGCAGGAGGGGATGAGAGGGTCGAGTGAACTTTACCTG
CGACGCGCGAGAACTCGCTCAGATCTAAGCTTACCTCGCTCGAACTCACTGGAAACCGTGGTGGGTGGGCGCTGGATCGGAGGCGGATTTGGCTGTGGAC
GGGGTGCGGGTGAGCGGACGCGATGGCTGGTGGGAGTGTTGGTGGGGCGGGGAGGAGGAAAGGGGGCGCGAGGAGCTCTTTTATAGCGACGCGGCGTCAC
CGCATTTGATTATCACCCTACTAATCCTCAGTGTCATCGCCGTGGCGCCGAAATTTTTGCCGCGGTGATTCCTGATCAGGGATTACTTCGCGCTTACTCC
TCCGAG