Detailed information on CNT30450081


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LM15|RA213_ARATH, E-value = 2e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672261Saccharum spontaneumSetaria viridis15.9370.6385.05368forward
CNT30440289Saccharum spontaneumAegilops tauschii4.8922.3892.92113forward
CNT30362823Saccharum spontaneumSorghum bicolor21.1394.0393.24488forward

Expression of CNT30450081

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MGWARGPSTEDCGDWRCRWRRAWMYCIWAGLSWPAPSAAAANGYPP*

>peptide 2 (42 aa)
MLILYIRSVHLEVRTMLIDEQEARKNWGQQSARTQIVYTTNI*

>peptide 3 (70 aa)
MRGSSELYLRRARTRSDLSLPRSNSLETVVGGRWIGGGFGCGRGAGERTRWLVGVLVGRGGGKGARGALL*

>peptide 4 (47 aa)
KKHGDFELKNIAQATTKPLQRTTHAESAKLCSSCISDQFISRFGQCS*

>peptide 5 (49 aa)
MKKLAEPNSHSKNRWHWWVDLLSRNLLAQVRCGIRTPLGYQPTSNLVDY*

>peptide 6 (43 aa)
MNKRQGKTGGNNQLGHRLFIQPTYNSSTNNSSSSNYNSLTQLG*

>peptide 7 (29 aa)
MALVGRSAQQELTCTSEVWNKNPSWLPTY*

Sequence

>CNT30450081
AAAAAACATGGAGATTTTGAGCTGAAGAACATTGCCCAAGCTACTACTAAACCTTTACAACGAACGACGCACGCAGAAAGTGCAAAGCTATGCTCATCTT
GTATATCAGATCAGTTCATCTCGAGGTTCGGACAATGCTCATAGATGAACAAGAGGCAAGGAAAAACTGGGGGCAACAATCAGCTCGGACACAGATTGTT
TATACAACCAACATATAATAGTAGCACTAACAATAGCAGTTCATCAAATTACAACTCCTTGACACAGCTAGGCTGATTTTACAACATACGGAGTACTACT
ACTTAATTAATATCACATCACACCGTGCTGTTCTTACAACCTGTAGAGCAGCACCATCTTCTAGCAAGAAACAGCTACCAGAACAATGGACACCTGAACG
GCCGGGGTCACTGACCAGTGACCGACCGACCGACCACCGGAGACGCCGGACACAAAAACGCCGGCTTCCCATCGGTTCGGTTGTGGTTCTCTCCTCCGGG
AACCAAACCCTAAATAACATAAGAGATCTACAACTGACTGACCGGTGACAGCAACAAAAACGAATTGAACATCTACACAAAACGAACGAACGGGATTAGC
ACTAATAATCCACTAGTGCCCGCGCAGGATGTCTAAAATCCCATCTGCGCGACGGCCGTTAACCTTAACCCTCTGCTGCAGTCTGCAGTAGTAGTCGGAA
GGAGCCAAGAAGAACAACAATGTCGGTCGGTGGTTAATTGGCGGCGAGGAGGGAGTCCCAGTCGATCTCGTACGACGGGTACTTGGTGAGCGCGAAGCCG
GCGGCCTCGTCCCACGGCGCCTCGCTGAAGTCCAGCTGCTGCATCTCCGGCACCGTCGACGACTCGGGGGAGGCGGACGGCGACGGGGACGGGCACGAGG
ACTCGGCGGCGGACTCGAGGCAGGACGAGGACGCGTCGTCGGAGGACGGCGAGGAGGAGCAGTTGCTGGTGGGGGCGGACGACGACGTGGCAGCTGCGGC
GGCGGCGGCGGCGGCGGCGGAGGCGGAGGCGGGCTTCTTGGCGCCCTTCTTGGACGCGGCGATGTTCTGGCAGAGCGTCTGGAGCTTGGCGTCGACGGAG
GCGTGAAGCGGGCCGCGGGAGGCGGCGTTGTCGGGGAAGTTGAGGCGCGCCGCGTCGCCGCGGAGGCGGTAGGCGGCCTGGTCGTAGGCGAGCGCCGCCT
CCTCGGCGGTGTCGAAGGTGCCGAGCCAGAGGCGGGTGCGGTTCCGCGGGAGGCGGATCTCGGCGACCCACTTGCCCCAGTGCCGCTGCCGCACGCCGCG
GTACAGCTTCTGCGGCCGCGGCGGGGTCGGGGCCGCCGCCGCGGACGCCTTCATGGGCTGGGCCCGCGGGCCCAGCACGGAGGACTGCGGCGACTGGCGC
TGCAGGTGGAGGCGGGCCTGGATGTACTGCATCTGGGCTGGGCTCAGCTGGCCCGCCCCCTCGGCCGCGGCGGCGAACGGGTACCCGCCGTAGGCGGCTG
CGGCGGCGACTTGGTGGAAGGAGAACGGCGACGAGGGACTGAGAGGCTGGTGGGTGTGGAGGAGCGGACTGGATCCGTGAGGAGGAGAGGAGGCATCCTG
GATAAAAGGCTCGAGTGCTCTCATCAGCTCCTCCCCTGACAGATCTATAGCGGCGGCCATCTAGACTGTTTTTTTTTTGTTTTTTTTTCTCTAGCAAACC
AAGAACAAAATGAAGAAACTGGCAGAACCCAACAGCCACAGTAAAAACAGATGGCACTGGTGGGTAGATCTGCTCAGCAGGAACTTACTTGCACAAGTGA
GGTGTGGAATAAGAACCCCTCTTGGCTACCAACCTACTAGCAACCTAGTGGACTACTAAAACCAAACCGACGAAGAAATAGCAGATCTGAAGCCCAGGAT
CTAAAAGGCCCCGGGTCTCTCGTTGTCTGCTCGAGGAAGACGAAAACAGAGCAAGGAGATGAGATTAGCAGGAGGGGATGAGAGGGTCGAGTGAACTTTA
CCTGCGACGCGCGAGAACTCGCTCAGATCTAAGCTTACCTCGCTCGAACTCACTGGAAACCGTGGTGGGTGGGCGCTGGATCGGAGGCGGATTTGGCTGT
GGACGGGGTGCGGGTGAGCGGACGCGATGGCTGGTGGGAGTGTTGGTGGGGCGGGGAGGAGGAAAGGGGGCGCGAGGAGCTCTTTTATAGCGACGCGGCG
TCACCGCATTTGATTATCACCCTACTAATCCTCAGTGTCATCGCCGTGGCGCCGAAATTTTTGCCGCGGTGATTCCTGATCAGGGATTACTTCGCGCTTA
CTCCTCCGAG