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Detailed information on CNT30450022


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 4e-144

BLAST vs NONCODE:
NONZMAT000139, E-value = 5e-76

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Saccharum spontaneumOryza sativa22.6327.8293.59234forward
CNT30671534Saccharum spontaneumSetaria viridis37.9150.9193.62392forward
CNT30520246Saccharum spontaneumSetaria italica33.6637.0289.66348forward
CNT30289434Saccharum spontaneumTriticum aestivum22.6340.4194.02234forward
CNT30554471Saccharum spontaneumOryza glaberrima22.6342.4793.59234forward
CNT30436341Saccharum spontaneumAegilops tauschii17.659.8792.31182forward
CNT30251924Saccharum spontaneumAvena sativa34.7265.9990.53359forward
CNT30681546Saccharum spontaneumTriticum urartu19.8393.6193.66205forward
CNT30341741Saccharum spontaneumEragrostis tef21.6636.9694.2224forward
CNT30361377Saccharum spontaneumSorghum bicolor36.6533.6689.71379forward
CNT30596661Saccharum spontaneumOryza meridionalis20.2158.3895.69209forward
CNT30370660Saccharum spontaneumOryza glumipatula22.6340.7793.59234forward
CNT30104991Saccharum spontaneumOryza longistaminata18.3880.1797.37190forward
CNT30102628Saccharum spontaneumOryza rufipogon22.6318.4493.59234forward
CNT30577143Saccharum spontaneumOryza barthii22.6346.1593.59234forward
CNT30496422Saccharum spontaneumDigitaria exilis22.0536.9593.42228forward
CNT30117165Saccharum spontaneumOryza nivara22.0550.8993.42228forward
CNT30604388Saccharum spontaneumOryza punctata15.0946.9994.87156forward
CNT30556802Saccharum spontaneumPanicum hallii29.334.2894.06303forward
CNT30551356Saccharum spontaneumOryza brachyantha15.1845.3895.54157forward

Expression of CNT30450022

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLLTMRTQRKPLPTSRLSVQSTDSSWYSGL*

>peptide 2 (28 aa)
MRMQRKPLPTSLLSVHSTDASSWSGLKGA

>peptide 3 (34 aa)
MTTSSPLPRSCFIYAHMLTCMQKDGARDEARLFC*

>peptide 4 (60 aa)
MIEHVHDRSTRRWMMINDRPFSSRAGSSSAGCRPRTTSRARCRCRRGRRRATCRRGGRRS*

Sequence

>CNT30450022
CGCAACTTTATTATTACAAGGTAGATACATACATACAGCTGCAACGTATACATGACCACGAGTAGCCCTTTGCCTCGCTCCTGCTTTATCTACGCACACA
TGCTGACATGCATGCAGAAAGACGGCGCACGAGACGAGGCTCGGTTATTCTGCTAGTACGTATATGTATGCGTACATAGATACATACATAGGCCAGTGTG
TACTGGTATAAGTGCATGCACGCACGTCTCCTCCATGCATGATCGAGCATGTGCACGATCGATCGACGCGACGATGGATGATGATCAACGACCGTCCGTT
CAGTAGTAGGGCTGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGATGTCGGTGCCGTCGCGGACGCCGCCGTGCCACTTGTCGC
CGTGGAGGGCGTCGAAGTTGAGGTAGATGTTGTTGACCATGCGGACGCAGCGGAAGCCGTTGCCGACGTCGCGGCTCTCCGTCCAGAGCACCGACTCGTC
CTGGTACTCCGGGTTGTAGGGCACCAGCTTCACGGGGTGGCCCTGCCCCGTGGAGTGCTTGAGCGCCTCGCCGGTGACCTTGTTCACCAGCGCGAAGGCC
GGGTACCCTTCCTCGTCCCGCACCCGGGTGCTGTGCCGCATGTCCTTGATCCAGTGCTGGTACTCGTCCCGCGGGTTGGTGGGCGCCAGGCACGCCGTCC
CGTTGCGCACCGTCAGGCTGTAGTCCTCGCCGCCGGCCTTGCAGAAGACGCGCACCGGGTGCACGCCGCCGTTGGCGGCGTGGGCCCCCGCCGCGGCGTT
CGCCTCGGGGCCCCACGGCAGGATCTTCCAGCTCTGGTTCTCGCCCTTGCACCACTCCCAGAGGACGACGGTGGTGCCGTCGTGCACGCCGCCGTGGTCC
TTGTCGCCGTGGAAGGCGTCGAAGTTGAGGCGGGTGTTGTTCACCATGCGGATGCAGCGGAAGCCCTTGCCCACGTCCTTGCTCTCCGTCCACAGCACCG
ACGCGTCCTCCTGGTCAGGGTTGAAAGGCGCGAG