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Detailed information on CNT30450016


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39096|ERD15_ARATH, E-value = 7e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694940Saccharum spontaneumOryza sativa7.4228.1892.6882forward
CNT30672185Saccharum spontaneumSetaria viridis20.3641.1394.22225forward
CNT30520324Saccharum spontaneumSetaria italica21.0935.3693.99233forward
CNT30221871Saccharum spontaneumHordeum vulgare10.415092.17115forward
CNT30436523Saccharum spontaneumAegilops tauschii15.2925.5786.98169forward
CNT30251998Saccharum spontaneumAvena sativa13.4851.7489.26149forward
CNT30659005Saccharum spontaneumTriticum dicoccoides20.4579.5889.38226forward
CNT30680544Saccharum spontaneumTriticum urartu19.9185.2786.36220forward
CNT30362862Saccharum spontaneumSorghum bicolor16.1135.1198.31178forward
CNT30147603Saccharum spontaneumBrachypodium distachyon9.8636.5887.16109forward
CNT30100764Saccharum spontaneumOryza rufipogon10.0541.1193.69111forward
CNT30496542Saccharum spontaneumDigitaria exilis29.6829.5290.55328forward

Expression of CNT30450016

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MAPAWYAGLSANLCCCWARGDGAATTAAALGELRLSALSTSRSYPGSSAGAGLATWWTSGA*

>peptide 2 (41 aa)
RTRSTWRRVLKIRLLAIIYSTGGGGIVHHSVPFFLFSNTAG*

>peptide 3 (36 aa)
NKKHLAKSFKDQTACHHIFNWRRRNSTSLRPFFFVF*

Sequence

>CNT30450016
CGAACAAGAAGCACCTGGCGAAGAGTTTTAAAGATCAGACTGCTTGCCATCATATATTCAACTGGAGGAGGAGGAATAGTACATCACTCCGTCCCTTTTT
TTTTGTTTTCTAACACGGCTGGATGAACAAGAAGTGAGCTGAACAGGAGAAAAACTAGCTACGAGGAGAGAGCACTTGCCGCCTTGGCCGAATCTCCCCT
CTGTTTTTTTAGTCGTATACACAGAAACAGACTAGCCTTGCTTGAGGTTACACTAGGCACAGCAGCCATGGTGGCAGCAGGAGAAGAAGCGCTCTTCTTC
TAGCGAGGCTGGTGGATGGCGCCGGCGTGGTACGCCGGCTTGTCCGCGAACCTCTGCTGCTGCTGGGCGCGCGGCGACGGCGCGGCGACGACGGCGGCGG
CCCTGGGGGAGCTGAGGCTGAGCGCCCTGAGCACGTCGAGGTCGTACCCAGGCAGCAGCGCCGGCGCCGGCTTGGCGACCTGGTGGACGTCGGGCGCGTA
GAAGAGGTCTTCGGTGTCGAGGAGGTCGACGGAGTCGTCGGGGAGGAGCGCGGCGACGTCGAAGTCGTCGGCGGCCTCGTGGAGCTGGTGCTGGCGGAAC
CAGTGGTCGCGGAACCAGGCGGTGGTGTTGACGAGCTCCCACCACTCGGGCGAGAAGTCCTCCACCTGCCGGTACGCCGCCGGGATGAAGAGCGGCGCGT
TCGGGTTCAGCGACGACGACGCCATGGCTGCCACGGTGCTCATCCTCCTCTCAGCTCAGGTCGCTCCTTGATCTGCTGCTCCTCTCTCCCTGGAACACAG
ACAGCAATCAATCAGCTCGAGGTCTTGTCGGCAGTTGGCTCAGATCCGGAACCGGAAGGGGATCGATCCCTCCCAGTTCGTTAGCGCCACGGATCTGAGA
GAGCTTCACGCAGCAGCAGGCAGTAGCTTGCCTTACCCTTTCCTCGCCTGGCGTTGTTTCGCTTCGCTTCGGGCGTGCGGACGGACGAGGGAAAAGGAGA
GGAGAGGAAATATCTCGTGCGGACCGCGGTTTCTGGGCGGAAACCGGGATGATTTCGGGCTGCCGAGCCCGTGTGCGGCGTGCGGTGGGGAGGAGGCGGG
TGTTT