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Detailed information on CNT30449919


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677187Saccharum spontaneumSetaria viridis29.2749.8383.33144forward
CNT30436120Saccharum spontaneumAegilops tauschii29.4729.4182.76145forward
CNT30134938Saccharum spontaneumLolium perenne34.5531.2580170forward
CNT30353463Saccharum spontaneumEragrostis tef29.2710.4281.94144forward

Expression of CNT30449919

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MSDTLKPGISNEVANFSTSALRFSMSWFPTKPFLKSLRILPCSSWMLKQMVTAW*

Sequence

>CNT30449919
GGGAAGCTTTATTATAGAACTTTTGGAAGACCGAGCTAAGCAGAATTATCTGCAATGTAATGCCATTTCTCCAACCATTATTCTCTAAACATACCATTAA
CAGTTTCCAACAAAATAGACCGGTCAAATAGCAGACCAACAGAATGGCGGCACTAAATTGAAAACATTCAGGTAGCCCCATTCACGTGACATTTCAGATG
CCCCAATGCTACTGTATAGGATAAAGGGTTTGCACCGAAGTCTGCCAATGTTACTGTAACAGGAGCAAGGGTTTGCACCAAAGTCAGCATTCTAATCTTT
GTACTTCATGTCAGACACCCTGAAGCCAGGCATCTCAAACGAAGTGGCAAACTTCTCGACCTCCGCCCTCAGGTTTTCTATGTCCTGGTTTCCCACCAAG
CCCTTTTTGAAGTCCCTGAGAATCTTGCCATGCTCCTCCTGGATGCTCAAGCAGATGGTCACAGCTTGGTGAAGGTACTCGGCAATCTGCAC