Detailed information on CNT30449555


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30142095Saccharum spontaneumLolium perenne5.0727.8687.556forward

Expression of CNT30449555

Peptides detected in this lncRNA

>peptide 1 (34 aa)
ACAVVSLLFFRFGACRAASLRLLLVNLFILYCCT*

>peptide 2 (70 aa)
MSIGFPGTPCCNVGGHYHRRAPPFHGLAPSSLAGTNDKTHVVNLAGQPKKTRQYGHLNKYIHTSGVAPCS*

>peptide 3 (60 aa)
MISEAQPNGWGLIPLDRALIGGAQPLHGWWAPDALRYIKGVGAAGSRHEVHRAPNPTLQP*

>peptide 4 (56 aa)
MDTSGSAPSNDGSTSKTLDLPHSTSQFVLFVSRFPFALLVIDPSKFIKVYQWYQPI*

>peptide 5 (44 aa)
RLRRRVTTFLSFWRMPCCKPATATRKLVHTVLLHMKDFDNCFRV*

Sequence

>CNT30449555
GCGCTTGCGCCGTCGTGTCACTACTTTTCTTTCGTTTTGGCGCATGCCGTGCTGCAAGCCTGCGACTGCTACTCGTAAACTTGTTCATACTGTACTGTTG
CACATGAAAGACTTTGATAATTGTTTTCGAGTTTAACTATATCCAAATTTTTAATTGCTTACAGTCGCTGTTAGAAATCGTAAATCAGAGCGACATTCCC
AAGTCCATGTCCATCGGCTTCCCTGGGACGCCCTGCTGCAACGTCGGCGGCCACTACCACCGCCGTGCGCCGCCCTTCCATGGCCTGGCCCCGTCGAGTT
TAGCCGGCACCAACGACAAAACTCATGTCGTTAACCTTGCTGGACAACCGAAAAAGACCAGACAATACGGCCACCTGAACAAGTACATACATACAAGTGG
TGTGGCGCCGTGCTCTTGAGGATCATGCACTTTGCAAAAGAATGCTGCTCTGTTTGTCTTAAAGCCAACCAGATTGAAAAAGAGAACTTCTTGTTAGGAT
GATCTCAGAGGCCCAGCCCAACGGCTGGGGCCTCATCCCCTTGGATCGCGCCCTGATCGGGGGCGCCCAACCGCTCCATGGTTGGTGGGCCCCCGACGCG
CTGCGCTATATAAAGGGAGTGGGGGCCGCAGGCTCGCGTCACGAGGTTCACCGTGCCCCAAACCCCACTCTACAACCCTAGGCCATCCGATCGGCTCGCG
CAGTGGCGTCGGGAAGCACCACCGCGCCGCCTTCTCTTCACTGCCGCACCACAGTTCCCGGACAACGCCGGTGGAGGCCCGAAGGAAGGCGTGATCTACT
TCACCGACACATCTACGCCATGGACACCTCCGGATCCGCTCCCTCCAACGACGGTTCAACTTCTAAAACCCTAGATCTACCTCATAGTACATCACAGTTT
GTTCTCTTTGTATCCCGATTCCCGTTCGCGCTACTAGTCATAGATCCTAGCAAGTTTATCAAAGTCTATCAATGGTATCAGCCGATCTAGTAGTAGATCG
GGCTCGGGAATCTTCTAGAACGAACAGCAAGTAACTAGAAAGGGGGTTTTTTCTTTTTCAAACCCTAACCCTAGCTAGCGCAAGAACACGGAACCCTAAC
CCTA