Detailed information on CNT30449351


BLAST search results

BLAST vs Swiss-Prot:
sp|A3C039|SAP1_ORYSJ, E-value = 4e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672179Saccharum spontaneumSetaria viridis19.6738.6995.38130forward
CNT30533125Saccharum spontaneumEucalyptus grandis18.7623.8586.29124forward
CNT30572839Saccharum spontaneumVitis vinifera13.623685.5690forward
CNT30330555Saccharum spontaneumDioscorea rotundata14.5231.0787.596forward
CNT30580811Saccharum spontaneumEchinochloa crusgalli22.5414.6495.97149forward

Expression of CNT30449351

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPAAPPLLRLRAPASAATPRPPPALKLRKRR*

>peptide 2 (52 aa)
MLVVDLAKGTRTTVPVSVSVCARAGGRLLFGGWERQGERDGGGGACELGGRL*

>peptide 3 (60 aa)
WRRPCSRSCSRAGPSTGARRRTARRTGTGTRSAPPASGSWSTGSRTSSPRPPERRRRRPP*

>peptide 4 (95 aa)
PGGALVVVAAAVPVRVPVRAAEQLAAPAPEPGQPHPLPAAGAPVHGRPRRGRRSGGGDDLHRLAHGRSSRRCLQLHRCCVYERRPRLRHRGRHRR*

Sequence

>CNT30449351
CCTGGCGGCGCCCTTGTAGTCGTAGCTGCAGCCGTGCCGGTCCGAGTACCGGTGCGCGCCGCAGAACAGCTCGCCGCACCGGCACCGGAACCCGGTCAGC
CCCACCCGCTTCCGGCAGCTGGAGCACCGGTTCACGGACGTCCTCGCCGCGGCCGCCGGAGCGGCGGCGGCGACGACCTCCATAGACTGGCCCACGGCCG
CAGCAGCCGGAGATGCCTGCAGCTCCACCGCTGCTGCGTCTACGAGCGCCGGCCTCGGCTGCGACACCGCGGCCGCCACCGGCGCTGAAGCTGAGGAAGA
GGAGGTAGGGGACGGCGGCGACGGCGACGACGACGACGACCTCGACGCCGTGGCCGCCGAGAAGCAGCTCTGGCAAAGGTTCTGCGTGGCCGGGTTCCCC
GGGAAGCCGCAGTTGTTGGCGCAGAGCGTGATCTCCGGCGCCCGGAGCTCCGTGGTCTCCTCCTTCTTGTCGCGCTGCGCCATGCTCGTCGTGGACCTGG
CAAAAGGAACCCGAACAACCGTGCCTGTGTCTGTGTCTGTGTGCGCGCGCGCGGGGGGGCGCTTGCTTTTCGGAGGGTGGGAGAGGCAGGGAGAGAGAGA
CGGAGGAGGGGGAGCTTGCGAATTGGGAGGCCGGCTGTGAGCCTGTGATCCGCCGGGAGCG