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Detailed information on CNT30448603


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30340693Saccharum spontaneumEragrostis tef25.772.1288.02167forward
CNT30579587Saccharum spontaneumEchinochloa crusgalli25.6222.0793.37166forward
CNT30593969Saccharum spontaneumEragrostis curvula25.7719.5687.43167forward
CNT30558858Saccharum spontaneumPanicum hallii25.6210.5890.36166forward

Expression of CNT30448603

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MGAFALRYLYIRAWCSSSIHCEGVNGLLVLDSRKACSLGPPKSKPR*

Sequence

>CNT30448603
TTCCCAGTTCCTTCTAGAATCTTCCACTGGACTACAAGACGCTCAGTACACCATGCCGCCTCCTGCAATCCTTGCTAGCTAGAGGTGGAGATCCGGCTCC
GCTCTGTCCTGCGAGCGCGAGGAGCACGGCGCTCCTTTCCCGCGCGCGCCGAAGGCCGTCTTCATCCGTCTCCCGCGCGGCCAACTGCCGCGTTCCCGTT
CACCGCTTTGCGTGCCGCCGTTTCTGTAGGGACGCGCACCCCCGTGAAGCGATTCCGCCGCCCATGACCCGGGGAGAACCCAATCGCGGCGCCGGCAAGT
AGATCCCTATCCCCAGGCGCTCGGCGGCGGCGGATCCTTTCCGTTGCAGACAGCAGGTCCTATTAGCGTCAACGGCCTGCCACTGCATAAGTTGCTCCGG
ATGCGAAGGCGGTGACGACGAGTTCCCCTCACCTACGTGCTACACTGCTACGGGAGCCACCCTGCTGCGTCGATCTCCTCCGGCTGGAAGGTATGGGGGC
CTTTGCATTGAGATACTTGTATATCAGAGCCTGGTGCTCCAGCTCCATCCACTGCGAGGGAGTAAATGGCCTCTTGGTCCTGGACAGCAGGAAAGCCTGC
TCGCTTGGGCCTCCAAAATCCAAGCCTAGATGATGGCGAAACAAGGAG