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Detailed information on CNT3044856


BLAST search results

BLAST vs Swiss-Prot:
sp|P42736|RAP23_ARATH, E-value = 1e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30704079Prunus dulcisPrunus avium8.8342.696.61118forward

Expression of CNT3044856

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTLRFVLITILELGIFGVACMCVCICVLAT*

>peptide 2 (30 aa)
RELSHYSFVPLIQPLTLLLLLLMMMCHQVT*

>peptide 3 (41 aa)
MVTVRFGVRVRWGASWTERLMTWWILSSTVTHDGKRTVTLV*

>peptide 4 (50 aa)
MVSNSDQRSSAVSVRPRLAEMKSEMIAPPHMLLILPLAGGVTSTQKRGFA*

Sequence

>CNT3044856
GGAGAGAGCTTAGCCACTACAGCTTTGTTCCTTTAATACAGCCGCTGACCCTGCTGCTGCTGCTGCTGATGATGATGTGTCACCAGGTCACCTAGCATCC
ACAGGTCCAACGAGTTGTTCGACTCACCACCACCCCTTCCATTCACCTCACTCGGCTCCTCCTCATCCAGACCCAGGAACGATTCCAAGCTCGATATCTG
CTCCTTCAGCTCATACTCACCACCCACCTCCTTCTTTCCATAAATCTCGCCACCCTCAAACGGATCATAGTTACAATAATTTCCACTGCTCTCCAAACTC
GACTGAGTCGACTCGGCTGGACCAACAACGCACCGCTTCTTCAAAGGCGGTGTTGCAGGAGCTGGAACTGAAGAAGGCGGTAATTCCGGAAAGTTGAGCT
TGGCTTTGCCGCCTCGGATGCGCCTGGCGGCGTCGTCGTAGGCTCTGGCGGCTTCCTCAGCTGTGTTGTAAGAGGTCAGAGATGGTGTCGAACTCGGACC
AGAGGTCCTCCGCCGTCAGCGTCCGGCCGCGCTTGGCGGAGATGAAGTCGGAAATGATAGCACCACCACACATGTTGTTGATATTGCCACTTGCAGGAGG
AGTAACTTCAACACAAAAAAGAGGCTTCGCATGACATAAACAACACACACACAAAAAGAGTGGTCGCTCTTCGGCTCTCCATTTATAGACAACCGTCGGT
TACAAGCAAACTTTTTCACGTGAAGACAAAACCACAGTAAGGCTTTTTTAGTGGGCCTTCTTTTTTTGGGTGGGGCCTGTGATCGGACGGTGCAGAAATG
TTTGATGCAAAAAGGGCAAAGGCCCGGTAGGAAAAAGTGAAGGAATCAAAAGAGGGACTGGGGAGATGCGTGGGTCTACAGGATAAAGGTTAGGGGTGAA
TTGATGGTGACCGTACGATTTGGGGTGAGGGTCCGCTGGGGAGCAAGTTGGACTGAGAGATTGATGACGTGGTGGATTTTAAGTTCGACAGTCACACACG
ACGGTAAAAGAACTGTTACTTTAGTTTAGCTCGGTCTGTGAAGAAGTGTAACGCGAGCGTCAGAGTTGGTTCCAAAATTTAACGGTTGAGCTGAAGGCCT
CGCGCTTGCGCTTTTGTCTTTTGGAGTGACACTGTTGGTAAATGACCCTAAGGTTTGTGCTAATTACAATCTTGGAGTTAGGAATTTTTGGGGTTGCTTG
TATGTGTGTTTGTATTTGTGTTTTGGCTACATGAAGTCCACAAGTTTTTAAAGATTTTCAACTCGTAAAAGAAAGAAGAAGCTTTTTTAGACTTTTGGCA
AAAGATGGTTGTCTAATGGTGGAGTCCTATTTGTTT