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Detailed information on CNT30448528


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Saccharum spontaneumOryza sativa12.3121.5691.62191forward
CNT3042646Saccharum spontaneumPrunus dulcis9.9226.5587.01154forward
CNT30296550Saccharum spontaneumTriticum aestivum10.3138.2889.38160forward
CNT30589303Saccharum spontaneumMusa acuminata9.7920.7184.87152forward
CNT30552945Saccharum spontaneumOryza glaberrima12.3123.4491.62191forward
CNT30241770Saccharum spontaneumAvena sativa3.8720.489560forward
CNT301613Saccharum spontaneumZea mays10.1827.7296.84158forward
CNT3067156Saccharum spontaneumLeersia perrieri5.9934.5793.5593forward
CNT30683907Saccharum spontaneumTriticum urartu12.1828.7789.95189forward
CNT30361567Saccharum spontaneumSorghum bicolor9.0934.2297.16141forward
CNT30596039Saccharum spontaneumOryza meridionalis17.65104.5885.4274forward
CNT30369879Saccharum spontaneumOryza glumipatula12.3126.691.62191forward
CNT30575527Saccharum spontaneumOryza barthii11.792991.8183forward
CNT30116295Saccharum spontaneumOryza nivara12.3120.2891.62191forward
CNT30603857Saccharum spontaneumOryza punctata12.3121.9591.1191forward

Expression of CNT30448528

Peptides detected in this lncRNA

>peptide 1 (32 aa)
APSTRHVSRAGPLICPWVEGKVRSTSTTARLQ*

>peptide 2 (28 aa)
MKSLFGCPIIQATAANSSKNDFFLTKSWF

>peptide 3 (35 aa)
PRVLATCREQAHLSVPGWKARCGVPVLLLGSSSKK*

>peptide 4 (34 aa)
MSGRMLKRVRLNSCTAAGTSAPTASGAYPTAHAE*

>peptide 5 (78 aa)
PEYSPRVASRPTYLSLGGRQGAEYQYYCSAPVVKSKKRNRVPEQVVLQSWRAQAQAHSKRRESRHFLILCIGRGKSRR*

>peptide 6 (45 aa)
MRTSLAKSSGRRMDARIPIMAETECPTKAQRGMRSASRMARRSST*

>peptide 7 (80 aa)
MGCPASLCSSSLRARARAEQAFGLRLALPLRAPSALFLLLLGLVREGVADWMTRSFWLCQRGAYEVFVWMPNYPGHSSKQ*

Sequence

>CNT30448528
GCCCCGAGTACTCGCCACGTGTCGCGAGCAGGCCCACTTATCTGTCCCTGGGTGGAAGGCAAGGTGCGGAGTACCAGTACTACTGCTCGGCTCCAGTAGT
AAAAAGTAAAAAAAGAAATCGGGTACCAGAACAAGTTGTACTACAGTCATGGCGCGCACAGGCACAGGCGCATAGCAAACGGCGCGAGTCGCGCCATTTT
TTGATTCTCTGCATCGGCAGGGGTAAATCGAGGCGGTAAAAATACCAATCACCACCAGGCAGGCGGCAGGCGAGCCACCGCCCACCGGCCGGCGGCCGCT
AGTACCGGGCGAGCGCGCGGCGGAGCACCTGGGCGAGGAGGCCTGGGGCGCTGAGGTGCGGGAGATGTCCGGCCGCATGTTGAAGAGGGTGCGGCTGAAC
TCCTGCACCGCCGCGGGCACGTCCGCGCCCACCGCCAGCGGGGCGTACCCGACCGCCCACGCCGAGTAGTTGGCCGCCATCGCGTCGAACACCTTCTGGA
TCTCCGGCAGCTCGAACCCGCCGTGGTAGTCGTTGTCGTTCAGGAACCTGGTGGCCCGGGCCGCCGGAAGGAATTCATCAATCAATCATCACTCATCTTA
TCGTCTAAAACAAAAGAGGGATGACGGAATTTGTTCTCTCCCGTCCCGCCTCAAAGTAAACTCGTTGGGTTCATTGATGAAATTGAACGAATGAATTCGA
TCGGCATCACGGCAAAGCCTTAGATAGATATATGCATATATACGGTACCTGGGCGATGCGCCGATGAGGACGAGCTTAGCGAAGAGCTCGGGCCGGCGGA
TGGACGCGAGGATCCCGATCATGGCGGAGACGGAGTGTCCGACGAAGGCGCAGCGCGGGATGCGGAGCGCGTCGAGGATGGCGAGGAGGTCGTCGACGTA
GGAGTCGAGCGTGTCGTAGAGCACCACGCGGTGGTCGCGGGTGAGGTAGGGGAGCACGCGGCTCCACGCCGACTGGTCCGTCCCGAACCCGTGCGACAGC
ACCACGAAGCGGTCGCCGTTGCCCACGACCCGCACGTTGAGGATCTGCAGCAGCTTGGCGCCGCTCGGGGCGCCGCCGCTGCCCGCCGCCGCCGCCGCGC
CGCCGCCCCCGACCATCGCGGCGTCGGAGCTGGACGACGCCGGCGCCGCGGAGCTGCTGCCGCTGGGTGAGTGCGTGGACCGGAGCATGAGTGAGACCAG
GACGGGTGGGGGACGGACTACGGGGAAGCAGAAGCGTCCGGGTCGTGGTCTTATGTAGCAGCTGGAGCAGAGGCCATGGGTTGCCCTGCTTCGCTCTGCT
CTTCCTCTCTCAGAGCCAGAGCCAGAGCAGAGCAAGCTTTTGGTCTCCGGCTGGCTCTCCCTCTCCGCGCGCCCTCTGCTTTATTCCTCCTCCTCCTGGG
TTTGGTGCGGGAGGGAGTTGCAGATTGGATGACGAGAAGTTTTTGGTTGTGCCAGCGAGGAGCATATGAAGTCTTTGTTTGGATGCCCAATTATCCAGGC
CACAGCAGCAAACAGTAGTAAAAATGATTTTTTCCTCACAAAGAGTTGGTTT