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Detailed information on CNT30448454


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONSLYT002586, E-value = 1e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Saccharum spontaneumSetaria viridis13.7234.0196.05253forward
CNT30512774Saccharum spontaneumJuglans regia51.6376.2881.51952forward
CNT3019595Saccharum spontaneumCitrullus lanatus26.0386.4982.5480forward
CNT30224330Saccharum spontaneumHordeum vulgare26.0399.3886.04480forward
CNT3085191Saccharum spontaneumVigna radiata8.9523.0184.24165forward
CNT30441049Saccharum spontaneumAegilops tauschii18.4990.2186.8341forward
CNT30309902Saccharum spontaneumCamelina sativa59.7197.0981.471101forward
CNT30263415Saccharum spontaneumBrassica rapa39.8698.5383.13735forward
CNT30716253Saccharum spontaneumMalus domestica golden70.5598.1182.171301forward
CNT30479087Saccharum spontaneumArabidopsis halleri10.5266.6786.6194forward
CNT30705326Saccharum spontaneumPrunus avium47.7868.5682.41881forward

Expression of CNT30448454

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRRAAVTSEEKSTCPGESIRLIRYWLPSLSPL*

>peptide 2 (33 aa)
CINLLLISECSILRDELIQTNHSNSVTTRNILN*

>peptide 3 (29 aa)
MVTLSFCSMGHNFSFWSFMQVLMICLIGS*

>peptide 4 (30 aa)
MRTSPATSWAIIPAAATRESVSVDLPAKNQ*

>peptide 5 (49 aa)
MMRTFIPVATFPEKTRPKAKNLPLSDAGIIFETYSIRGPSGSQFLIAVA*

Sequence

>CNT30448454
ATGCATCAACCTCCTTCTCATTAGTGAGTGTAGCATTCTTCGTGATGAACTGATCCAGACCAACCATAGCAACAGTGTTACCACAAGGAACATCCTCAAC
TGACTCTTGTTTCTTTCCCATCCAGATAACAGTACGCTGGACACTCTTGACATACAGATCCTTCTTCTGGCCGGGGACATAGTTGGGACCCATGATGCGA
ACCTTCATACCAGTAGCAACCTTCCCTGAGAAGACACGACCGAAGGCAAAGAACCTGCCCTTGTCAGATGCTGGAATCATCTTTGAAACATACAGCATAA
GAGGACCCTCCGGATCACAGTTTCTGATAGCAGTTGCATAGACGTCATCAAGGGGTCCCTCGTACAAGTTCTCCACACGATACTTTTGAGCCTTTGCCGG
GGAAGGAAGGTGGAATATCATCATCTCGAGCAGTGCAGTGCTAGCTGGTAGCCACGTTTGCATAACACGCTTCATCAAAGCTTTGCCAATCAATTCCTTC
TCATCAGCCTTCATGGTAACATTGAGCTTTTGCAGCATGGGCCACAATTTCTCCTTCTGGTCGTTCATGCAGGTGTTGATGATTTGCTTGATTGGCTCAT
AGCAGAACTGAACAAATCCTCTCTTGCAGGTAGGAGAGCCTGTGTTCTTGGTGGTCCATTTCTTGGTGGCGGGGTCAAAGAAGTTCTCACCCCAAAGCCT
CTCCATCATCTTAGCTTCATCAACTCCAAACTTAGACGCATACATCTTCGCAAAGTTAGTGAGGGTAAAGGCCCATCCGTGCAGGCCAGCAGAAAAAGCA
ACGGTGCCCTTCTCTGGGTACACTTGGACATCACCAAGGAGCTTATCTTCATATGTTGCCATGATGACATTGGCATTCTCAATGACACGGGAGAAAGTCT
GGTAAGCTTCCTCGCCCTCAACCTGAAGCTCAAGGAAGCACCTGTCCATCTTGTTCACGGTAAGAACTGGCCTAATCCTCTCACCAAGGGCTTGGCGAAG
CACAGTTTCAGTTTGCACACAGACACCTTCAATACAGTCAACCACCACCAGAGCACCATCGGTGATGCGAAGAGCAGCTGTGACTTCCGAAGAAAAATCA
ACGTGCCCAGGCGAGTCAATAAGGTTGATCAGGTATTGGTTACCATCTCTCTCGCCCTTGTAATTCTTCAGTGACTCATCAGTCATCTCATAGTAAAGAG
AGATACCGGTAGATTTGATTGTAATACCGCGCTCTGCCTCATCTGCACGAGTATCAGTCATGCGAACATCGCCAGCAACTTCCTGGGCAATAATACCAGC
AGCTGCCACAAGGGAATCTGTAAGCGTAGACTTGCCTGCAAAGAATCAATAATAGCATATTAGAACGGTGTGGAACTTCAACATGTGCAACATAGAGTAG
TACAACTAACATATACTATATAAAACACAATACCTAGAGAACCAGTACATTAATTACAAAATGACAAAAGGATAAGCCCATTTCCTACATGGGCTAAATA
TCTGAACATAAAGCAGTTAACTAGGCCTAAAATAGAGATAGTGCAGCAAGAAAAGAAACATCAGCTGTAAAGCAAAACACAAAGCTTAAATATTGAAAAC
ACAAAAGTTAATAACACACTAGGGTATTACAAATTTACAATCTAAAACATACAGCCAATAGTAGATAATTATCTGTGAATATAGCCCTATTTCATACATG
CGATAAATATCTGTGAATATAGGCATATAGTATAGTAGATAATGCAGCATGAATAGAAGCATCAGCAGTCAAGCACAGAACAGAGCTTAAATGTTGAAAA
AGAACAAATCTTGATATTGAAAAGGCTTGAGCAGTGTTCTGAAC