Detailed information on CNT30447838


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 1e-47

BLAST vs NONCODE:
NONZMAT000139, E-value = 5e-91

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30392320Saccharum spontaneumTriticum turgidum87.899891.84196forward
CNT30106627Saccharum spontaneumOryza longistaminata89.2498.0395.48199forward
CNT30148227Saccharum spontaneumBrachypodium distachyon76.6867.8690.64171forward

Expression of CNT30447838

Peptides detected in this lncRNA

>peptide 1 (73 aa)
GTIFQRWLSPSHHFQSTTAVPSRTPPWSLSPWKASKLRRMLFTMRMQRKPLPTSPLSVHSTDSSWYSGLNGTSF

>peptide 2 (73 aa)
GDDLPALVVALAPLPEHDGGAVAHPAVVLVAMEGVEVEADVVHHADAAEALAHVAALRPQHRLVLVLRVERHQL

>peptide 3 (36 aa)
GRSSSAGCRPRTTSRARRRCRRAPRRGPCRHGRRRS*

Sequence

>CNT30447838
GGGGACGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGACGGCGGTGCCGTCGCGCACCCCGCCGTGGTCCTTGTCGCCATGGAAG
GCGTCGAAGTTGAGGCGGATGTTGTTCACCATGCGGATGCAGCGGAAGCCCTTGCCCACGTCGCCGCTCTCCGTCCACAGCACCGACTCGTCCTGGTACT
CCGGGTTGAACGGCACCAGCTTC