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Detailed information on CNT30447830


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678417Saccharum spontaneumSetaria viridis16.0827.8895.6592forward
CNT30522336Saccharum spontaneumSetaria italica26.7557.7494.77153forward
CNT30553163Saccharum spontaneumOryza glaberrima25.8710.7692.57148forward
CNT30683546Saccharum spontaneumTriticum urartu37.7657.2985.65216forward
CNT30361641Saccharum spontaneumSorghum bicolor21.3310.37100122forward
CNT30147849Saccharum spontaneumBrachypodium distachyon18.3623.8191.43105forward
CNT30100699Saccharum spontaneumOryza rufipogon25.8713.4592.57148forward

Expression of CNT30447830

Peptides detected in this lncRNA

>peptide 1 (51 aa)
VLQLQMGQGKGEAGTSACTAPSTRHVSRAGPLICPWVEGKVRSTSTTARLQ*

>peptide 2 (34 aa)
MSGRMLKRVRLNSCTAAGTSAPTASGAYPTAHAE*

>peptide 3 (98 aa)
CVAVADGTRQRRSWNERVHRPEYSPRVASRPTYLSLGGRQGAEYQYYCSAPVVKSKKRNRVPEQVVLQSWRAQAQAHSKRRESRHFLILCIGRGKSRR*

>peptide 4 (55 aa)
LCCSCRWDKAKAKLERARAPPRVLATCREQAHLSVPGWKARCGVPVLLLGSSSKK*

Sequence

>CNT30447830
CTGTGTTGCAGTTGCAGATGGGACAAGGCAAAGGCGAAGCTGGAACGAGCGCGTGCACCGCCCCGAGTACTCGCCACGTGTCGCGAGCAGGCCCACTTAT
CTGTCCCTGGGTGGAAGGCAAGGTGCGGAGTACCAGTACTACTGCTCGGCTCCAGTAGTAAAAAGTAAAAAAAGAAATCGGGTACCAGAACAAGTTGTAC
TACAGTCATGGCGCGCACAGGCACAGGCGCATAGCAAACGGCGCGAGTCGCGCCATTTTTTGATTCTCTGCATCGGCAGGGGTAAATCGAGGCGGTAAAA
ATACCAATCACCACCAGGCAGGCGGCAGGCGAGCCACCGCCCACCGGCCGGCGGCCGCTAGTACCGGGCGAGCGCGCGGCGGAGCACCTGGGCGAGGAGG
CCTGGGGCGCTGAGGTGCGGGAGGTCGGTGTTGAAGACGGTGCGGCAGACGTGGAGGGAGATGTCCGGCCGCATGTTGAAGAGGGTGCGGCTGAACTCCT
GCACCGCCGCGGGCACGTCCGCGCCCACCGCCAGCGGGGCGTACCCGACCGCCCACGCCGAGTAGTTGGCCG