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Detailed information on CNT30447822


BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 4e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692405Saccharum spontaneumOryza sativa9.923.9388.0667forward
CNT30684877Saccharum spontaneumTriticum urartu34.1236.4483.12231forward
CNT30100768Saccharum spontaneumOryza rufipogon32.231.0581.19218forward
CNT30116368Saccharum spontaneumOryza nivara22.4524.484.21152forward

Expression of CNT30447822

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MGRMLARRAVQRHTAASRSASPWISVQHGVLGGVPRLTLISPLSTLAHTPSFSASTGQRPLVPPPPPPPPPPPPPPPLPPPPPLPPPPPLPP

>peptide 2 (87 aa)
IHPSDHTDNYHTVIMVFIFIDGDRRVGSRQASRHDRSWIHPAQTQDDAMMDMLHACMHDSRFVKKHTPKAKAKQNKLKRRTKNCAVH*

Sequence

>CNT30447822
ATTCATCCATCAGATCACACAGATAATTACCACACTGTAATAATGGTATTTATATTCATAGATGGAGATCGTCGTGTCGGGTCCCGCCAGGCCTCTCGAC
ACGATCGATCATGGATCCATCCAGCACAAACACAGGACGACGCGATGATGGACATGTTGCATGCATGCATGCATGATAGCAGATTCGTGAAGAAACACAC
ACCCAAAGCAAAAGCAAAACAAAACAAATTAAAGCGACGAACGAAGAACTGTGCTGTGCACTAGTAGCTTGTACTTGTTGCTGAGAAATCATGATTATTT
AGACCGGCCGGCCGGGTGTTGGCGACGATGAGATCGATCAGGAGCACTGGAAGCCCGAGGGGACGCGCCTGCCGCAGTAGTTGACGAGGAGGCTGAGGTT
GATGGGCAGGATGTTGGCTCGCAGGGCGGTGCAGAGGCACACCGCAGCCTCCAGGTCCGCCAGCCCCTGGATCAGCGTGCAGCACGGCGTCCTGGGCGGC
GTCCCCAGGTTGACGTTGATCAGCCCGTTGAGCACGTTGGCGCACACGCCCAGCTTCAGCGCGTCCACGGGGCAACGACCGCTGGTCCCGCCGCCTCCGC
CGCCGCCTCCGCCTCCGCCTCCGCCTCCGCCGCTGCCGCCTCCTCCGCCGCTCCCTCCGCCGCCTCCGCTCCCACCA