Detailed information on CNT30447580


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555322Saccharum spontaneumOryza glaberrima20.6912.2488.3360forward
CNT30667627Saccharum spontaneumTriticum dicoccoides38.2837.585.59111reverse complement
CNT30370252Saccharum spontaneumOryza glumipatula24.482.2388.7371forward
CNT30105187Saccharum spontaneumOryza longistaminata22.078.0990.6264forward
CNT30103427Saccharum spontaneumOryza rufipogon22.0711.2192.1964forward
CNT30576560Saccharum spontaneumOryza barthii24.483.6490.1471forward
CNT30604419Saccharum spontaneumOryza punctata24.4826.0190.1471reverse complement

Expression of CNT30447580

Peptides detected in this lncRNA

>peptide 1 (33 aa)
KVDAVEIGRRSAVAVTAWRCFPSLGCAPIRDRI*

Sequence

>CNT30447580
GAAGGTTGATGCAGTGGAGATCGGGCGGCGCAGTGCAGTGGCGGTGACGGCGTGGAGGTGCTTCCCGTCACTTGGCTGCGCCCCTATTCGAGATCGGATT
TAGGGTTTGTAGGTGGGGCGTCGAGCTCAGGTCAACCTCGTGATGTGAGCCGCCGGCACCCCACCTCTATTTATAGCGCAGGGTGACGGGGGCCCTCCAG
CCATAGATGGGCTGGGCGCCCCCGATCAGGGCGCGAGTCAAGGCCCAAAGAAGCCGTTGGGCCTCCTTGGTCAGGAGATCAACCTAACAG