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Detailed information on CNT30447572


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3G0|RR3_SACHY, E-value = 5e-89

BLAST vs NONCODE:
NONORUT000960, E-value = 8e-73

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694723Saccharum spontaneumOryza sativa28.5310.8392.46491forward
CNT30676816Saccharum spontaneumSetaria viridis10.4681.4598.33180reverse complement
CNT30304119Saccharum spontaneumTriticum aestivum20.3410094.57350forward
CNT30220592Saccharum spontaneumHordeum vulgare13.7195.9395.34236forward
CNT30391503Saccharum spontaneumTriticum turgidum8.8930.693.46153forward
CNT30562314Saccharum spontaneumActinidia chinensis4.1828.893.0672forward
CNT30590093Saccharum spontaneumMusa acuminata7.7321.7786.47133forward
CNT3018340Saccharum spontaneumZea mays48.1162.1697.22828forward
CNT30649878Saccharum spontaneumRosa chinensis4.5335.6289.7478forward
CNT30684618Saccharum spontaneumTriticum urartu55.49100.2190.05955forward
CNT30720298Saccharum spontaneumTriticum spelta12.8410095.48221reverse complement
CNT30349424Saccharum spontaneumEragrostis tef25.62100.9293.65441forward
CNT30358685Saccharum spontaneumLactuca sativa4.8821.6591.6784forward
CNT30415027Saccharum spontaneumPapaver somniferum8.5437.6985.71147forward
CNT30585636Saccharum spontaneumEchinochloa crusgalli45.6713.6994.27786forward
CNT30604560Saccharum spontaneumOryza punctata13.7123.4494.92236forward
CNT30557814Saccharum spontaneumPanicum hallii22.2537.0498.17383forward

Expression of CNT30447572

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MRGFNSCRSPIALLQFPKMQFSIFLVTYLLTATKNKTITIFFPFPSSSSKRRITPRGCGFFSTNGGFPFTTPMGVVHRVHNYPSYYG

>peptide 2 (38 aa)
MPSRHEFPQFATYHRICYVNRYMFFSIMNRDCMANHCG*

>peptide 3 (58 aa)
MRFCALKTRSNLSRRSVGTFLASFLSPFFFFILGVYFTNLKLVINKVITRLSLFSLMI*

>peptide 4 (35 aa)
MVILGCTKSETEWIYFLSHIFLLYFFFLLGIEILD*

>peptide 5 (38 aa)
MTSYKRIRFFRVTADYSFFHFKEWHPMSTISIEVWRSE*

>peptide 6 (34 aa)
MEVRINRIIMNGKKRKSFSWIRGGCSQVDQGSGL*

>peptide 7 (34 aa)
FRKNIRLSIRFFNLFDSNIKSLVYRINFLLEIFL*

Sequence

>CNT30447572
TTCCGCAAGAATATTAGGTTGTCTATAAGGTTCTTTAACCTTTTCGATAGCAATATTAAGTCTCTGGTTTACAGAATTAACTTCCTTTTGGAGATCTTTC
TCTAATTCTTCGATTGCTCCCTTTTTCTTTAATAAATTGGGGAATCCAATATGGATTATGACGTGGATTGTATCGATTTCTTTTTGAATTTCTATATGTG
TAATTACTTCAGAACTTGAGTCTGATTCCATTTTTCTATTCGAGCCTTTTTTCCTATTCTTTTGTATATAGTTCTTGATACAATTCCGTATTTTTTTATC
TTCCTGTAGACCTTCAGAATAATTTTTTGGTTGTGCGAACCAAAAGGAATGGTGATTTTGGGTTGTACCAAGTCTGAAACCGAGTGGATTTATTTTTTGT
CCCATATTTTTCTATTATATTTCTTTTTTTTACTGGGAATCGAAATTTTAGATTGATCTAAAGATTATTTAGATTTCTTTACTATATTTAGTACAATTGT
TATATTACACATCATTTTTTTATAGAATAACTACGTCCTCGAGCTCGAGGTCTGAATTTTTTCATAATAGTACTCCTACTAACTTCGGCTTTAGTGATGA
ATAAATTTGTTTTGTCAAAATCCCTATAATGAGTAGCATTTGCTGCTGCCGAATAAACCAACTTTAAGATGGGATACGATGCTCGATAAGGCATGAGATT
CAGTATCATAACGGTTTCCTCGTAGTAACGCCAGCGAATCTCATCTAGAACTCTTTGTGCGTTGAAAACAGACATATGTATGCGTTTTTGTGCTTTGAAA
ACCCGTTCGAATTTAAGTAGACGATCGGTTGGAACTTTTCTTGCGAGTTTTCTCAGCCCCTTCTTCTTCTTTATCCTAGGGGTATACTTTACCAATTTGA
AACTTGTCATAAATAAGGTTATTACCCGCCTATCTTTATTTTCTTTGATGATTTGAATCCTATAAATTTTGTTTATTCTGAACCTTTCTATTTTGAATTC
AATTAACGACGAGATTTAGTATCCTTTCTTGTACTTTCATAACTCATGAAATGCCGAGTAGGCACGAATTCCCCCAATTTGCGACCTACCATAGGATTTG
TTATGTAAATAGGTATATGTTCTTTTCCATTATGAATCGCGATTGTATGGCCAACCATTGCGGGTAGAATGCTAGATGCCCGGGATCACGTTACTATTAT
TTCTTTCTCCTCCTTCATATTGACCTTTTCGATTTTTGCCAATAAATGACGAGCTACAAAAGGATTCGTTTTTTTCGTGTCACAGCTGATTACTCCTTTT
TTCATTTTAAAGAGTGGCATCCTATGTCCACTATCTCGATCGAGGTATGGAGGTCAGAATAAATAGAATAATAATGAATGGAAAAAAGAGAAAATCCTTT
AGCTGGATAAGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATGCGCGGGTTCAATTCCTGTCGTTCGCCCATCGCATTATTG
CAATTTCCAAAAATGCAATTTTCCATATTCCTAGTTACGTATTTACTTACGGCGACGAAGAATAAAACTATCACTATATTTTTTCCTTTTCCTAGTTCTT
CTTCCAAGCGCAGGATAACCCCAAGGGGTTGTGGGTTTTTTTCTACCAATGGGGGCTTTCCCTTCACCACCCCCATGGGGGTGGTCCACAGGGTTCATAA
CTACCCCTCTTACTACGGGGC