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Detailed information on CNT30447268


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 2e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677790Saccharum spontaneumSetaria viridis36.1534.3994.33141forward
CNT30376827Saccharum spontaneumArabidopsis thaliana34.156.3688.72133forward
CNT30628401Saccharum spontaneumVigna unguiculata34.8740.4884.56136forward
CNT30200079Saccharum spontaneumPisum sativum27.4426.6288.79107forward
CNT30712448Saccharum spontaneumGlycine max40.2636.9485.35157forward
CNT3090157Saccharum spontaneumSolanum tuberosum32.0519.3884125forward
CNT30125320Saccharum spontaneumPhyscomitrium patens36.6714.783.92143forward
CNT30221211Saccharum spontaneumHordeum vulgare44.114.9491.28172forward
CNT30508643Saccharum spontaneumSolanum lycopersicum32.0516.2583.2125forward
CNT30605939Saccharum spontaneumGossypium raimondii38.4627.2286.67150forward
CNT30361473Saccharum spontaneumSorghum bicolor75.955.0295.95296forward
CNT30154413Saccharum spontaneumPrunus persica32.5632.8290.55127forward
CNT30418220Saccharum spontaneumPapaver somniferum38.9735.3582.89152forward
CNT30328607Saccharum spontaneumAsparagus officinalis32.8222.3882.81128forward
CNT30114434Saccharum spontaneumEutrema salsugineum34.3633.6788.81134forward

Expression of CNT30447268

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MDGAQVGVFKQANKVCLSSLLEGKHRMALETQISLQ

>peptide 2 (42 aa)
MMVTRLAWMAHRLVSSNRPTRYASAASWRASTAWLWKRRSVCK

>peptide 3 (66 aa)
ERSSSAGNTASRCLHLIHVTDCQHVAATHSAAVQKLVIHKTNPTHMSLQRHQIKIIATTQGFILSR*

Sequence

>CNT30447268
CGAAAGATCCAGCAGCGCAGGCAACACTGCTAGTCGGTGTCTACATCTCATTCACGTCACAGACTGTCAGCACGTAGCAGCAACACATAGTGCGGCAGTA
CAGAAACTTGTGATCCACAAAACAAACCCTACTCATATGTCCTTACAACGGCACCAGATTAAAATCATTGCTACGACACAAGGCTTCATTTTGTCACGAT
GATTTGAGGGGGATTAGGCCCTCTCGCCACGGATCCTCCTTGCCAGCTGAATGTCCTTGGCATGATGGTCACACGCTTAGCATGGATGGCGCACAGGTTG
GTGTCTTCAAACAGGCCAACAAGGTATGCCTCAGCAGCCTCCTGGAGGGCAAGCACCGCATGGCTCTGGAAACGCAGATCAGTCTGCAAA