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Detailed information on CNT3044720


BLAST search results

BLAST vs Swiss-Prot:
sp|P43287|PIP22_ARATH, E-value = 6e-79

BLAST vs NONCODE:
NONBRAT002539, E-value = 6e-16

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531266Prunus dulcisEucalyptus grandis18.9729.5581.6125forward
CNT30513856Prunus dulcisJuglans regia15.7833.2383.65104forward
CNT30698271Prunus dulcisQuercus lobata15.7833.0287.5104forward
CNT30375820Prunus dulcisArabidopsis thaliana11.9928.3284.8179forward
CNT3070602Prunus dulcisQuercus suber17.9137.4686.44118forward
CNT30404916Prunus dulcisBeta vulgaris14.4223.4684.2195forward
CNT30629601Prunus dulcisVigna unguiculata20.0329.2782.58132forward
CNT30504332Prunus dulcisNicotiana attenuata10.7720.785.9271forward
CNT30163276Prunus dulcisPistacia vera12.5926.9589.1683forward
CNT30589490Prunus dulcisMusa acuminata19.4244.1480.47128forward
CNT30543361Prunus dulcisBrassica napus15.4833.0183.33102forward
CNT30552699Prunus dulcisOryza glaberrima16.2427.2382.24107forward
CNT3082727Prunus dulcisBrassica juncea15.3321.4485.15101forward
CNT30613102Prunus dulcisArabis alpina9.7124.6289.0664forward
CNT30227661Prunus dulcisAnanas comosus21.5562.2885.21142forward
CNT30646760Prunus dulcisRosa chinensis24.5838.6680.86162forward
CNT30595656Prunus dulcisOryza meridionalis14.5728.7482.2996forward
CNT30354871Prunus dulcisLactuca sativa22.1544.6583.56146forward
CNT30570969Prunus dulcisVitis vinifera10.3224.7388.2468forward
CNT30176173Prunus dulcisVigna angularis15.7834.183.65104forward

Expression of CNT3044720

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MYKTALGSETLRAKNSPKAQAMPRMPTPPHWSPLLWDL*

>peptide 2 (66 aa)
MKTANPMGSGTNDLSSQASALVVPSSQLVGSTTILLVVCLLEGLHQPNTADCTQRLGYDVQNCPRQ*

>peptide 3 (46 aa)
LVIPSFVLVVDHSSSKTSSRVDTSSSDWDGGQVNNENSKSNGKWYQ*

>peptide 4 (61 aa)
MSFGRPSPTQHRRLHPKTGLRCTKLPSAVKPCEPRIVQRPRRCPECQRRRIGLHCSGTCSQ*

Sequence

>CNT3044720
TTGGTCATCCCAAGCTTTGTCCTTGTTGTAGATCACAGCAGCTCCAAAACTTCTAGCAGGGTTGATACCAGTTCCAGTGATTGGGATGGTGGCCAGGTGA
ACAATGAAAACAGCAAATCCAATGGGAAGTGGTACCAATGATCTCAGCTCCCAAGCCAGTGCCCTTGTTGTACCCAGCAGCCAACTCGTTGGCTCCACCA
CCATACTCCTCGTAGTATGTCTTTTGGAAGGCCTTCACCAACCCAACACCGCAGATTGCACCCAAAGACTGGGCTACGATGTACAAAACTGCCCTCGGCA
GTGAAACCTTGCGAGCCAAGAATAGTCCAAAGGCCCAGGCGATGCCCAGAATGCCAACGCCGCCGCATTGGTCTCCACTGCTCTGGGACTTGTAGCCAAT
GACGGTCAAAACGGTGATGTAAAGGAAGAGAAGGGTGGCAACGAACTCAGCAATAAGAGCTCTGTAGAAAGACCATTTGGTCAGCTCCTCAGCATCAAAG
AAGGGGGTTGGAGGAGGGTCCTGGTAGTCTTTGGCTGCAAACTCACCATGCTCAGCTCCCTCTACATCTTTAGCCATGGCTTCTTCTGTGACTAAAAATT
AAATTATCTATGTGCTTGTTGTGGCTTGTGAAGTATGTGCTTTTGGATTGGGGCTTGGT