« Back to Saccharum spontaneum search


Detailed information on CNT30446776


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520517Saccharum spontaneumSetaria italica41.0440.9189.68126forward
CNT30287058Saccharum spontaneumTriticum aestivum27.0423.8587.9583forward
CNT30553080Saccharum spontaneumOryza glaberrima39.0943.6493.33120forward
CNT30436477Saccharum spontaneumAegilops tauschii40.0740.4686.18123forward
CNT30252195Saccharum spontaneumAvena sativa20.214.996.7762forward
CNT30680806Saccharum spontaneumTriticum urartu27.0423.9289.1683forward
CNT30721394Saccharum spontaneumTriticum spelta66.7876.7888.29205forward

Expression of CNT30446776

Peptides detected in this lncRNA

>peptide 1 (90 aa)
WDWPSECLMASPVALLTRANAGLPSSSLIWLLKRMSLYQCWWAGARRRGPGGAPAGSGRGGRGARSRTSSRALLSSGFWGGLGGSLDQTN*

Sequence

>CNT30446776
GATGGGACTGGCCGAGTGAGTGCTTGATGGCGAGCCCCGTGGCCTTGTTGACGAGGGCGAACGCAGGGTTGCCCTCCTCGTCCTTGATCTGGTTGCTGAA
GCGCATGTCCTTGTACCAGTGCTGGTGGGCTGGTGCACGCCGCCGTGGGCCGGGGGGTGCGCCGGCGGGTTCTGGCCGTGGTGGCCGTGGTGCCCGAAGC
CGAACATCTTCTCGAGCTCTTCTCTCCTCGGGGTTTTGGGGAGGGTTGGGTGGATCGCTTGATCAGACGAACTAGCAGATGGAGGATTTGGGACGGGGCG
ATGAGAA