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Detailed information on CNT30446699


BLAST search results

BLAST vs Swiss-Prot:
sp|P29302|PSAD_NICSY, E-value = 8e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695521Saccharum spontaneumOryza sativa28.3233.1692.52254forward
CNT30677834Saccharum spontaneumSetaria viridis23.344.0995.69209forward
CNT30521815Saccharum spontaneumSetaria italica38.4669.1494.49345forward
CNT30639185Saccharum spontaneumNymphaea colorata26.0954.883.76234forward
CNT30525887Saccharum spontaneumPhaseolus vulgaris9.9223.885.3989forward
CNT30630495Saccharum spontaneumVigna unguiculata18.2828.9281.1164forward
CNT30710271Saccharum spontaneumGlycine max25.6446.1881.74230forward
CNT30298930Saccharum spontaneumTriticum aestivum23.325.1590.91209forward
CNT30395090Saccharum spontaneumTriticum turgidum27.4222.8889.84246forward
CNT30554655Saccharum spontaneumOryza glaberrima28.3229.0392.52254forward
CNT30440464Saccharum spontaneumAegilops tauschii27.4229.6489.84246forward
CNT30246994Saccharum spontaneumAvena sativa27.4229.4693.09246forward
CNT30666088Saccharum spontaneumTriticum dicoccoides23.326.0690.91209forward
CNT30971Saccharum spontaneumZea mays35.7956.3295.33321forward
CNT30344027Saccharum spontaneumEragrostis tef25.227.9795.13226forward
CNT30361538Saccharum spontaneumSorghum bicolor46.3885.7791.35416forward
CNT30619829Saccharum spontaneumCajanus cajan26.223.8383.83235forward
CNT30596768Saccharum spontaneumOryza meridionalis24.9728.6191.52224forward
CNT30358483Saccharum spontaneumLactuca sativa16.6122.7883.22149forward
CNT30370811Saccharum spontaneumOryza glumipatula28.3232.1192.52254forward
CNT30577354Saccharum spontaneumOryza barthii28.3230.992.52254forward
CNT30579569Saccharum spontaneumEchinochloa crusgalli35.0135.9792.36314forward
CNT30117312Saccharum spontaneumOryza nivara28.3232.2392.52254forward
CNT30113105Saccharum spontaneumFicus carica26.0929.2588.89234forward

Expression of CNT30446699

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MSKLILYLERSLVPSARHCSLRASFRRLGPSRMMAAPPVGISNTCSFGDVHVMT*

Sequence

>CNT30446699
CTAAGATACACGAATCTTGGTACACTATAATTCCGTGCATTAAGCACTAAGCACTAAACAGCACCTGATTTTATCTTACAAGTAAGTGGTATGCTTGTTC
GAAAAATTCAGACGTAGCTAGGATAAGCGGAGTGGTGTCATTGTAAGTGTTGAATCAATAGTTGACTACCGTCGGATTTTTGGAACGTAGGCATATCATT
CACTGGCTTTTGTTTTAAATATGATGCAATTTTAGGATCAAACTAAGTCAAACTTGTCTAAGTTCGATTAAATTTATATACTATTAATTAATATTAACAT
GTATGACTTTAAATATGTGTACTACTAGTTTTGGATGGAGGGAATGAATACACGTATATATATAGGACTAAATTACTAACGGTATGCAAAGGCCGTACGT
GATGCATGCGATGGATTAGATGTCGAAGTTGATCTTGTACTTGGAGCGCAGCCTGGTGCCGAGCGCCAGGCACTGCTCCTTGCGCGCCAGCTTCAGGAGG
TTGGGCCCCTCCCGCATGATGGCGGCGCCGCCCGTGGGCATCTCGAACACCTGCTCCTTCGGGGACGTCCACGTGATGACGTAGAACTCCTCCACCTGCG
CCTTGCGGAGCAGCCCGCCCGTGCTGCCGCCGAAGATCGGCGACGGCGTGTTGGGGTCCAGCTGCGGGGGCACGAACCCCTTGGGCGCCTCCTTGGTCAC
CGCCTCCTCGGCGGACGCGCGGAGCGGGGCCGGCCCGCGGGAGGACGACGGCGGCGGCATCGCGAGCTGCGAGCTCAGCTGCCGTGGCTTCGCCCAGGCT
GCGGCCAGCAGGTGGCGCGTGGCGGCGGAGGCTTGCGTGGCCATGGCCATGGGCGCTGCTTCTTGGAAGGAACTAGGAAGGATCGAGCAAGCGAATC