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Detailed information on CNT30446634


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SEZ3|CDF5_ARATH, E-value = 6e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30361347Saccharum spontaneumSorghum bicolor60.5410097.26402forward

Expression of CNT30446634

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MSFSFRCFICSARSKLDMSEPKLSTVPFVFAAVQSGSMGRAALTLCRKWEAADALLLLRRPAPTGTLRMAPPAVQYLWQFLQK

>peptide 2 (32 aa)
MLYTPPLPTPRLQSSNVQNFSCAALNGSSSQN*

>peptide 3 (30 aa)
MRSCSCADLHPQARCAWHRQQSSTSGSSCRS

Sequence

>CNT30446634
TGAAAAACAATTTTGCAACCAAATATTCCAATCTTCATAATATTATTAATTATATCCACAAATAAGGAAACTTGCTCTCCTTATCCATCCCCGACCCATA
TATATGGCTATCTACAAATATCTATTGTATAGTTTCAAGGTCCGCTTGCAGCTATGAGCTATGTTATACACCCCTCCATTGCCCACACCTAGATTACAAT
CCTCTAATGTACAAAATTTCAGCTGTGCCGCGCTAAACGGCTCGTCTTCACAGAATTGAGGTTCATATGATGTTCAAGATCCCTCCTGGAAGGTCAATGA
CCGTGAGAGCGCAGCTGGGTTCCCCTGCAAGAACGGCAAGCCGTTGATGACTGGGTCCTTCAGTGCAAGAGCCAACTGAACGTTCATCGCCGTTGTTGAT
CCCCGCTATTGGGATGAGCTTCTCCTTCAGGTGCTTCATCTGTTCTGCGAGGTCTAAGCTGGACATGTCAGAGCCAAAGCTGAGCACCGTGCCATTCGTC
TTCGCTGCCGTGCAGAGCGGATCGATGGGCAGAGCGGCCCTGACCCTCTGCAGGAAGTGGGAAGCGGCTGATGCGCTCTTGCTCTTGCGCCGACCTGCAC
CCACAGGCACGTTGCGCATGGCACCGCCAGCAGTCCAGTACCTCTGGCAGTTCTTGCAGAAGTG