Detailed information on CNT30446496


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30339792Saccharum spontaneumEragrostis tef50.6867.2690.67150forward
CNT30361429Saccharum spontaneumSorghum bicolor33.1117.9598.9898forward

Expression of CNT30446496

Peptides detected in this lncRNA

>peptide 1 (75 aa)
VADEVVGALVLGGGEIDGYDLVLGAGLLQRHHAPSHVPRHRRTVQLHRSHMNDDLISFFLLPRSPLSSLSLVCAN*

>peptide 2 (51 aa)
CGRGGRGSCARRWRNRWVRSGTRRRPPPAPPRTESRSTTPSHRTASSEPYE*

>peptide 3 (44 aa)
MTTLLAFSSFLALLSPLSLSSVLTSLFSPLRMISLLARRIGAVV*

>peptide 4 (50 aa)
LRTRWSGLLCSAVAKSMGTIWYSAPASSSATTHRVTFHDTVAPYSFIGAI*

Sequence

>CNT30446496
GTTGCGGACGAGGTGGTCGGGGCTCTTGTGCTCGGCGGTGGCGAAATCGATGGGTACGATCTGGTACTCGGCGCCGGCCTCCTCCAGCGCCACCACGCAC
CGAGTCACGTTCCACGACACCGTCGCACCGTACAGCTTCATCGGAGCCATATGAATGACGACCTTATTAGCTTTTTCCTCCTTCCTCGCTCTCCTCTCTC
CTCTCTCTCTCTCGTCTGTGCTAACTAGCTTATTTTCGCCTCTTAGGATGATTTCTCTGCTAGCTAGGCGAATTGGCGCAGTAGTGTGATGAGCCC