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Detailed information on CNT30446371


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 6e-143

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30229012Saccharum spontaneumAnanas comosus29.7230.7687.06255forward

Expression of CNT30446371

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MAGVTLGHHGRWLKGAVGDFSHGQLLVVGLLSGDNWSVGGKHEVDPRVGHQVGLELIHIHIKSTIKPQ*

>peptide 2 (73 aa)
MPHLKPVGHQSTNWMVRLVLIVATAAFTSLGTTSPRYMRQQAMYLPWRGSHLAIMDDGSKALLVISATDSCSW*

>peptide 3 (41 aa)
MRSNLWSMRENTSTTLVELEIMHTARCTLARSPPGTTLGGW*

>peptide 4 (61 aa)
MPHQQASSTHHPRRLPHPHQTQLQPPRSPSQAPPDPRGPRRTHPPPYPHPRTSARRHAWRT*

Sequence

>CNT30446371
ACGACAGCATCTTAAATATCAAGAAAGAAGCAACAATGTAGATAACCATCCAATAACCCAGTGGCAAAGCGGGGGGAACTAACCACAAGTCTTACAACAT
CTGGTAACGAGACACTCAGGGCAGATCACAGGATAAGAGCAGCGCACAGGCCTGACGATGCCACACCAGCAAGCTTCTAGTACTCATCACCCTCGTCGCC
TTCCTCACCCTCATCAAACTCAGCTCCAACCTCCTCGTAGTCCTTCTCAAGCGCCGCCAGATCCTCGCGGGCCTCGGAGAACTCACCCTCCTCCATACCC
TCACCCACGTACCAGTGCACGAAGGCACGCTTGGCGTACATGAGGTCAAACTTGTGGTCGATGCGGGAGAACACCTCCACAACGCTGGTGGAGTTGGAGA
TCATGCACACAGCGCGCTGCACCTTGGCCAGGTCACCGCCAGGCACCACACTTGGAGGCTGGTAGTTGATGCCACACTTGAAGCCAGTCGGGCACCAGTC
CACAAACTGGATGGTGCGCTTGGTCTTGATAGTGGCCACAGCAGCATTCACGTCCTTGGGGACCACGTCACCACGGTACATGAGGCAGCAGGCCATGTAC
TTGCCATGGCGGGGGTCACACTTGGCCATCATGGACGATGGCTCAAAGGCGCTGTTGGTGATTTCAGCCACGGACAGCTGCTCGTGGTAGGCCTTCTCAG
CGGAGATAACTGGAGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCATTCACATCCACATTAAGAGCACCATC
AAACCTCAATGAGGCAGTCAGGGATGAGATGACCTGCACAAGATCAGTAACAGATAAT