CANTATAdb - search

Detailed information on CNT3044609

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FNV8|MY114_ARATH, E-value = 2e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30159432	Prunus dulcis	Pistacia vera	49.12	14.13	85.71	252	forward
CNT30645688	Prunus dulcis	Cannabis sativa	22.22	10.66	81.58	114	forward

Expression of CNT3044609

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MMGIYIYIYVYMYVYRLPRRRWRRRMRSSSSGAIWPRLTEGRR*

>peptide 2 (45 aa)
GSEGSEVGGGLGLVFELKRLVLEEETVAALLMLLSMSAAATVAEE*

>peptide 3 (74 aa)
MPWLISFLLRMDDGHIYIYICIYVCIPVAQEAMEAKDEIFFVGGDLAALDRRAEVVHPAEAATLAAAEQPRPLG*

Sequence

>CNT3044609
GGCTCAGAAGGCTCAGAAGTAGGAGGAGGACTAGGGTTGGTGTTTGAGCTGAAGCGATTGGTTTTGGAAGAAGAAACTGTTGCTGCTTTGTTAATGTTGC
TGTCCATGTCAGCAGCAGCAACAGTAGCCGAGGAGTGAATATCTGGATTTAGAGGCTTGTGGGTTCTGGGATCTATGCCTTGGCTGATCAGCTTCTTGCT
CAGAATGGATGATGGGCATATATATATATATATATGTATATATGTATGTATACCGGTTGCCCAGGAGGCGATGGAGGCGAAGGATGAGATCTTCTTCGTC
GGGGGCGATCTGGCCGCGCTTGACAGAAGGGCGGAGGTAGTTCATCCAGCGGAGGCGGCAACTCTTGCCGCAGCGGAGCAGCCCCGCCCTCTTGGGTAGG
GTCCGCCATCGGCCCTCACCTTCTTTATTGATGTAATTGGACAAGAGCTCGTCCTCTTCTGGCGTCCACGGCCCTCTCTTCAAACCCACCTTGATACAAC
ACGGCGTCTTGCT