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Detailed information on CNT30446079


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692142Saccharum spontaneumOryza sativa29.4637.8483.46266forward
CNT30343298Saccharum spontaneumEragrostis tef28.4636.8789.11257forward

Expression of CNT30446079

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSKCGSHKSREMKYYLAANLANRSKFTSRIV*

>peptide 2 (30 aa)
MFDTSIETSTTIHIQETDDTASAQSLPPHK*

>peptide 3 (57 aa)
MFRIFPGWRRKSPQVNLATSSFHNQYIYSYIIVLTRGNRKEENIQALAMKSNFQTNS*

>peptide 4 (36 aa)
MHRKVVRKMHVAPMHHNKFALPNEAEPFGLRSQTIA*

Sequence

>CNT30446079
ACCTATAAACGATGCAAGAAAGCCTTGATTAGGAGCCAACAGGCAAAACCATGCACAGGAAGGTTGTGCGCAAAATGCACGTAGCACCAATGCACCATAA
CAAGTTTGCCTTGCCGAACGAAGCAGAACCATTTGGCTTGCGGAGTCAAACGATTGCCTAGCAGAGCGAGTTTGGCACCCATGTAGCACCATAACAAAGG
CAAGTGAATCGCTACAAGAATGAGTAAATGTGGATCCCATAAATCAAGAGAGATGAAATACTATTTGGCAGCTAATCTAGCCAACAGATCAAAATTCACG
TCTAGAATTGTCTGACCGACAAACCAAGTAGTCAGCTACAGAAACGCCTTTTCATAGGTTGTCAGCAAGCATCAGCACCTTCTTGAATGTTGCTCACCTC
TTCATCCTAATTGATGTTTGACACCTCTATCGAAACTAGCACAACAATCCATATCCAAGAAACTGATGATACTGCCTCAGCCCAGTCCTTACCTCCGCAC
AAGTGACACAACTGCTTTTAAATAGTGTAACTTGCAAACAGAAATTCCTTGATGTTCAGAATATTTCCTGGCTGGAGAAGGAAATCGCCTCAGGTCAATT
TGGCAACTTCATCCTTCCATAATCAATATATCTACAGCTACATAATTGTTCTGACACGCGGTAACAGGAAAGAGGAAAACATTCAGGCACTTGCCATGAA
GAGTAACTTCCAGACGAACAGTTAGGTCTGATATTATTTGGTTTCTCTGGTAGTAGCCCAATGCTGCCCTCAAGCTTGGCGCCAGCATGCTGTTGTCACT
ATGCATCCACAGGAGAGCCTACACAACATTAGTGTCATGAGCTAAAATGAAGTCACAAATCATTTCATAGGTAGGATACACAATTGATAGTATCAGTGGC
GGA