« Back to Saccharum spontaneum search


Detailed information on CNT30445994


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONSLYT002586, E-value = 2e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640134Saccharum spontaneumNymphaea colorata22.8947.3885.28326forward
CNT30373037Saccharum spontaneumArabidopsis thaliana34.924.484.31497forward
CNT30728649Saccharum spontaneumCorchorus capsularis31.1840.7783.78444forward
CNT3071371Saccharum spontaneumQuercus suber17.4986.7686.35249forward
CNT30405829Saccharum spontaneumBeta vulgaris38.6966.7181.13551forward
CNT30636551Saccharum spontaneumCapsicum annuum29.6363.9482.23422forward
CNT30192963Saccharum spontaneumSecale cereale18.2648.6988.85260forward
CNT30391299Saccharum spontaneumTriticum turgidum8.0120.7389.47114forward
CNT30543621Saccharum spontaneumBrassica napus10.2557.0386.99146forward
CNT30510528Saccharum spontaneumSolanum lycopersicum85.2594.2582.621214forward
CNT30143750Saccharum spontaneumMedicago truncatula16.8531.3384.58240forward
CNT30665536Saccharum spontaneumTriticum dicoccoides45.8699.0985.91653forward
CNT30612239Saccharum spontaneumArabis alpina98.9553.6681.831409forward
CNT301916Saccharum spontaneumZea mays28.5810096.56407forward
CNT30722731Saccharum spontaneumTriticum spelta8.3623.2988.24119forward
CNT30361875Saccharum spontaneumSorghum bicolor35.6746.0696.85508forward
CNT30370118Saccharum spontaneumOryza glumipatula13.4130.9190.05191forward
CNT3054398Saccharum spontaneumAmborella trichopoda29.6361.5281.75422forward
CNT3024028Saccharum spontaneumPopulus trichocarpa18.435.4585.88262forward
CNT30119815Saccharum spontaneumCitrus clementina26.5482.3581.75378forward
CNT30557952Saccharum spontaneumPanicum hallii29.9252.2794.13426forward

Expression of CNT30445994

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRRAAVTSEEKSTCPGESIRLIRYWLPSLSPL*

>peptide 2 (29 aa)
MVTLSFCSMGHNFSFWSFMQVLMICLIGS*

>peptide 3 (49 aa)
MIRTFIPVATFPEKTRPKAKNLPLSDAGIIFETYSIRGPSGSQFLIAVA*

>peptide 4 (38 aa)
PAMICSPDSSIVQRTIGSDFARRFKPSTSLGRSEATLH*

Sequence

>CNT30445994
CCAGCAATGATATGCTCACCAGACTCTTCCATTGTACAGAGAACCATAGGATCAGACTTCGCCAGACGCTTCAAACCTTCGACTAGCTTGGGAAGGTCAG
AGGCAACCTTGCACTGAACAGCAACACGCACAACAGGAGAGACAGAGAACTTCATTGCTCTGATTGGGCATGCATCAACCTCCTTTTCATTAGTGAGTGT
AGCATTCTTCGTGATGAACTGATCCAGACCAACCATAGCAACAGTGTTACCACAAGGGACATCCTCAACTGACTCTTGTTTCTTTCCCATCCAGATAACG
GTACGCTGGACACTCTTCACATACAGATCCTTTTTCTGGCCAGGGACATAGTTGGGACCCATGATCCGAACCTTCATACCAGTAGCAACCTTCCCTGAGA
AGACGCGACCGAAGGCAAAGAACCTGCCCTTGTCAGATGCTGGAATCATCTTCGAAACATACAGCATAAGAGGACCCTCCGGATCACAGTTTCTGATAGC
AGTTGCATAGACGTCATCAAGGGGTCCCTCGTACAAGTTCTCCACACGATACTTTTGAGCCTTTGCCGGGGAAGGAAGGTGGAATATCATCATCTCGAGC
AGTGCAGTGCTAGCTGGTAGCCATGTTTGCATAACACGCTTCATCAAAGCTTTGCCAATCAATTCCTTCTCATCAGCCTTCATGGTAACATTGAGCTTTT
GCAGCATGGGCCACAATTTCTCCTTCTGGTCGTTCATGCAGGTGTTGATGATTTGCTTGATTGGCTCATAGCAGAACTGAACAAATCCTCTCTTGCAGGT
AGGAGAGCCTGTGTTCTTGGTGGTCCACTTCTTGGTGGCAGGGTCAAAGAAGTTCTCACCCCAAAGCCTCTCCATCATCTTAGCTTCATCAACTCCAAAC
TTAGATGCATACATCTTGGCAAAGTTAGTGAGGGTAAAGGCCCATCCGTGCAGGCCAGCAGAAAAAGCAACAGTCCCCTTCTCTGGGTACACTTGGACAT
CACCAAGGAGCTTATCTTCATATGTTGCCATGATGACATTGGCATTCTCAATGACACGGGAGAAAGTCTGATAAGCTTCCTCGCCCTCAACCTGAAGCTC
AAGGAAGCACCTGTCCATCTTGTTCACGGTAAGAACTGGCCTAATCCTCTCACCAAGGGCTTGGCGAAGCACAGTTTCAGTTTGCACACAGACACCTTCA
ATACAGTCAACCACCACCAGAGCACCATCGGTGATGCGAAGAGCAGCTGTGACTTCCGAAGAAAAATCAACGTGTCCAGGCGAGTCAATAAGGTTGATCA
GGTATTGGTTACCATCTCTCTCGCCCTTGTAATTCTTCAGTGACTCATCAGTCATCTCATAGTAAAGAGAGATACCAGTAGATTTGATTGTAATACCGCG
CTCTGCCTCATCTGCACGAGTATC