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Detailed information on CNT30445720


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641622Saccharum spontaneumNymphaea colorata76.1255.6592.961619forward
CNT30318007Saccharum spontaneumCorylus avellana76.446.4994.651625forward
CNT30550295Saccharum spontaneumIpomoea triloba54.9199.7494.261168reverse complement
CNT30519077Saccharum spontaneumJuglans regia76.4987.5794.471627forward
CNT30619309Saccharum spontaneumSesamum indicum69.5367.3293.041479forward
CNT30730441Saccharum spontaneumCorchorus capsularis65.5999.6493.761395reverse complement
CNT30632395Saccharum spontaneumVigna unguiculata76.7353.9394.061632reverse complement
CNT30194621Saccharum spontaneumPisum sativum76.7358.4393.51632reverse complement
CNT30508033Saccharum spontaneumNicotiana attenuata76.4948.8693.31627reverse complement
CNT30711135Saccharum spontaneumGlycine max76.6851.3493.931631reverse complement
CNT3047217Saccharum spontaneumPrunus dulcis76.5445.7491.831628reverse complement
CNT30383013Saccharum spontaneumTriticum turgidum76.7761.5396.141633reverse complement
CNT30588049Saccharum spontaneumMusa acuminata75.2774.8894.691601reverse complement
CNT30365083Saccharum spontaneumSorghum bicolor60.8471.2696.451294reverse complement
CNT30355977Saccharum spontaneumLactuca sativa67.5682.0790.881437reverse complement
CNT30434068Saccharum spontaneumPapaver somniferum76.1661.293.581620reverse complement
CNT30583181Saccharum spontaneumEchinochloa crusgalli76.9669.8498.531637reverse complement

Expression of CNT30445720

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PPSPFPWLWFRWIVDRDSGNLVNPFMRVTN*

>peptide 2 (37 aa)
MAHLELPIPWHGSPEQPCRPTYLKFENRSRALRPRCL*

>peptide 3 (86 aa)
MCKCRSHGTFLLFGLQSSHLNICYYHQDLHRRPLRPGSRPGFCGGRRALLLIGAWRSPRWPGVGRALQRHPFSGLVDSAGELLHTP*

>peptide 4 (92 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSNSNPSQKIRVGQRSRRPLQRSAPRGAPCGARRPAVPTTAAGGA*

>peptide 5 (53 aa)
MGSSYPEGNFGGNQLLDGSISLSPLYPSQTNDLHVSIASSLHQSFLWLRPAQA*

>peptide 6 (53 aa)
MSTTGRGRYSVLRIFKGRRGRTGHRATCGALPTAGPYLRLNRFQGWQAVKQKR*

Sequence

>CNT30445720
TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG
AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATC
ACATTGCGTCAGCATCCGTGGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGGTTGTTCGACGC
CCGGGGAAGGCCCCCGAAGGGACCGTTCCCGGTCCGTCCCCCGGCCGGCACGCGGCGGCCCGCTCTCGCCGCGGGAGCAGCTCGAGCAGTCCGCCGGCAG
CCGACGGGTTCGGGGCCGGGACCCCCGAGCCCAACCCTCAGAGCCAATCCTTTTCCCGAAGTTACGGATCCGTTTTGCCGACTTCCCTTGCCTACATTGT
TCCATTGGCCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGGACGGTACTCGGTCCTCCGGATTTTCAAGGGCCGCCGG
GGGCGCACCGGACACCGCGCGACGTGCGGTGCTCTTCCGACCGCTGGACCCTACCTCCGGCTGAACCGATTCCAGGGTTGGCAGGCCGTTAAGCAGAAAA
GATAACTCTTCCCGAGGCCCCCGCCGGCGTCTCCGGACTTCCTAACGTCGCCGTCAACCGCCACGTCCCGGCTCGGGAAATCTTAACCCGATTCCCTTTC
GGGGGACGCGCGAGATCGCGCTGTCTGCCGGGGTTACCCCGTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTT
CGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCCGGGTTTTGCGGCGGCCGC
CGCGCCCTCCTACTCATCGGGGCATGGCGCTCGCCCAGATGGCCGGGTGTGGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAG
GTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCA
GTTCGGCACCGTAATCCGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCACGGCTCACC
GGAGCAGCCGTGCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCTGATAGAACTCGT
AATGGGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTG
CACGTCAGTATCGCTTCGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCGTGCTCCAAC
TCGAACCCTTCACAGAAGATCAGGGTCGGCCAGCGGTCTCGCAGGCCGTTGCAGCGCAGCGCCCCGAGGGGCGCGCCTTGCGGCGCGCGGAGACCGGCCG
TGCCGACGACGGCTGCCGGAGGCGCCTAGGGCCCCCGGGCTTAGGCCGCCGGCGCGGCCGACAACGGTCCACGCCCCGAGCCGATCGGCGGACCAGCAGG
AGCCGTTCCGCATACGACCGGGGCGCATCGCCAGCCCCCATCCGCTTCCCTCCCGGCAATTTCAAGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCAT
CTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCCAAACAACCCGAC
TCGTTGACGGCGCCTCGTGGTGCGACAGGGTCCGGGCCGGACGGGGCTCTCACCCTCCCAGGCGTCCCTTTCCAGGGAACTTGGGCTCGGTCCGTCGCTG
AGGACGCCTCTCCAGACTACAATTCGG