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Detailed information on CNT30445673


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677855Saccharum spontaneumSetaria viridis42.3222.0797.35113forward
CNT30522214Saccharum spontaneumSetaria italica32.2110.9897.6786forward
CNT30305412Saccharum spontaneumTriticum aestivum25.8423.2394.269forward
CNT30588421Saccharum spontaneumMusa acuminata39.3337.2383.81105forward
CNT30662767Saccharum spontaneumTriticum dicoccoides42.3254.3390.27113forward
CNT3015514Saccharum spontaneumZea mays32.2117.6698.8486forward
CNT3067157Saccharum spontaneumLeersia perrieri39.722.8988.68106forward
CNT30361636Saccharum spontaneumSorghum bicolor40.8229.6297.25109forward
CNT30584731Saccharum spontaneumEchinochloa crusgalli42.78.3284.21114reverse complement

Expression of CNT30445673

Peptides detected in this lncRNA

>peptide 1 (88 aa)
KCSLSLIRSPAAAGSLAGGLSLHGQRHGASHGAVLERVQHLQVPPGLAPLQVPPGLAPLQVGHVLPETVHAGQGHQPLRVQLPGVSASN

>peptide 2 (87 aa)
SAPFRSSGLQPPRGHLLEGSPSTASGTVLAMVRYLSAYSISRYRRVSRLSRYRRVSRLSRLDTYFQKPYTPVRVISLSEYSFQVYLRQ

Sequence

>CNT30445673
AAGTGCTCCCTTTCGCTCATCAGGTCTCCAGCCGCCGCGGGGTCACTTGCTGGAGGGCTCTCCCTCCACGGCCAGCGGCACGGTGCTAGCCATGGTGCGG
TACTTGAGCGCGTACAGCATCTCCAGGTACCGCCGGGTCTCGCGCCTCTCCAGGTACCGCCGGGTCTCGCGCCTCTCCAGGTTGGACACGTACTTCCAGA
AACCGTACACGCCGGTCAGGGTCATCAGCCTCTCCGAGTACAGCTTCCAGGTGTATCTGCGTCAAAC