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Detailed information on CNT30445586


BLAST search results

BLAST vs Swiss-Prot:
sp|Q60E70|COBL3_ORYSJ, E-value = 9e-86

BLAST vs NONCODE:
NONORUT005134, E-value = 6e-72

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678474Saccharum spontaneumSetaria viridis25.7944.7495.8238forward
CNT30189491Saccharum spontaneumSecale cereale7.3724.5588.2468forward
CNT30149Saccharum spontaneumZea mays58.7298.5592.99542forward
CNT30351991Saccharum spontaneumEragrostis tef31.0944.4392.68287forward
CNT30596300Saccharum spontaneumOryza meridionalis27.411487.75253forward
CNT30101734Saccharum spontaneumOryza rufipogon27.4125.3388.14253forward

Expression of CNT30445586

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGQTNYIRRGREVGWFIFIHFYKEDKFTYLCHPHME*

>peptide 2 (39 aa)
MHKPTEQPRQPRIPRVGVSMVVLLEGLHSAAMDNFQEMA*

>peptide 3 (44 aa)
MKAWVFSSWWMVRNHLFPHPIEVHLMESDINLKLAKPLDPTHHA*

>peptide 4 (55 aa)
KSYGRTISPSLDCTTSMVSYGYIYQAMGGICPVLSSEASEQQHHEGLGFFFVVDG*

>peptide 5 (44 aa)
QKLRANHQPILRLHYIYGFLWIYIPGHGWHMPCSELRGFRAAAP*

>peptide 6 (47 aa)
MTQLSPLKYTRRGKAQPFSKVKVRESLRRSSSDCTFPSLPACISKSL*

Sequence

>CNT30445586
CCAAAAGCTACGGGCGAACCATCAGCCCATCCTTAGACTGCACTACATCTATGGTTTCTTATGGATATATATACCAGGCCATGGGTGGCATATGCCCTGT
TCTGAGCTCCGAGGCTTCAGAGCAGCAGCACCATGAAGGCCTGGGTTTTTTCTTCGTGGTGGATGGTTAGGAACCATTTGTTCCCGCATCCAATCGAAGT
GCACCTCATGGAATCCGACATCAATTTGAAGCTTGCTAAACCTCTTGATCCCACTCATCATGCATAAGCCAACAGAGCAGCCAAGGCAACCCAGAATACC
AAGAGTGGGAGTGTCAATGGTTGTTTTGTTAGAGGGCTTGCATTCGGCAGCCATGGATAATTTTCAGGAGATGGCATGACACAATTATCACCATTGAAGT
ACACCCGGCGTGGGAAGGCCCAACCCTTTTCGAAGGTGAAAGTCCGGGAGTCCTTGCGGAGAAGCAGTTCTGATTGCACATTTCCAAGTTTGCCGGCTTG
CATCAGCAAATCATTGTAGAATTTTACACCCCAGAACATTGCTGTATCATCTGAAATGGGACAGACAAACTACATCAGAAGAGGTAGGGAGGTAGGTTGG
TTTATTTTTATTCATTTCTACAAGGAAGACAAGTTTACTTACTTATGCCACCCCCATATGGAGTAAGTGGTTTGTAGTTGAAGCTGAACAACTGAGTGAT
ATTATCAAAGTTTGGATGCTGAGCTACTAAGTTCCACTGCGTGTAATTCATGCGAAAGTTGAAGTTTGTGATAGTGATTTTCACTCTCCAGTATTCCTTG
TAGTTGAGCTTCACATGCCAGTGGATTCTTATCGGGCACATGTGTGAAGTGCATTGTACAAGAGGCTGGCCAGTCCATTTGCCAGGACCATCAATTGCAG
CTTGTAGATTAGGTGAATCCTCA