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Detailed information on CNT30445192


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-145

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30226205Saccharum spontaneumHordeum vulgare64.8886.8285.49896forward
CNT30321313Saccharum spontaneumAsparagus officinalis61.6264.9184.37851forward
CNT30593897Saccharum spontaneumEragrostis curvula66.5581.8387.81919forward

Expression of CNT30445192

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MYAKTKPCLLIHYSNEAAKGSICFAERYGTIAETGTQETRPHIRRDKLNSEPQFAQTLIGHHEGAKPGGV*

>peptide 2 (51 aa)
MVLPVRVFTKICICRDKNHMVSYHKEKGAEKTSALKRMVQISTMKQWYQQTE

>peptide 3 (50 aa)
MPSLSWIFAFTLSIVSDDSTSRVMVLPVSVFTKICIPPRRRSTKWRVDSF*

>peptide 4 (29 aa)
MPRPNHVYLSITVMKLLKAAYVLRNAMGQ*

>peptide 5 (55 aa)
MFCGTLWDNSRNWDTRDSTSHQTRQTELRTPIRSDPYWPPRRRKTRWSVDSFWIL*

>peptide 6 (31 aa)
MKTVRSANQIKRKMTQTNVCQDQTMFTYPLQ*

>peptide 7 (30 aa)
MVFPVRVFTKICMPPLSLSTRWRVDSFWML*

Sequence

>CNT30445192
ATTGGTACTAATTTCAAACAGAGTATTCATTTAAGTTAAACTCTTGTGTTCATTTCAGACTACCTGAAGGTCAAATTTCTGGTGATACCAACCCTCAGCA
TATAAAGAACACACGAAATCCATGAAGACAGTGAGATCAGCAAATCAGATAAAACGCAAAATGACACAAACAAATGTATGCCAAGACCAAACCATGTTTA
CTTATCCATTACAGTAATGAAGCTGCTAAAGGCAGCATATGTTTTGCGGAACGCTATGGGACAATAGCAGAAACTGGGACACAAGAGACTCGACCTCACA
TCAGACGCGACAAACTGAACTCAGAACCCCAATTCGCTCAGACCCTTATTGGCCACCACGAAGGCGCAAAACCAGGTGGAGTGTAGACTCCTTCTGGATA
TTGTAGTCCGCCAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTTGCCT
TCACATTGTCGATCGTGTCAGACGACTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATACCACCACGGAGGCGGAGCAC
CAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTGCGGCCATCCTCGAGTTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGG
ATGCCCTACTTGTCTTGAATCTTTGCCTTTACATTATCGATCGTATCAGAAGACTCAACTTCAAGTGTGATGGTCTTCCCAGTCAGAGTCTTCACAAAGA
TCTGCATGCCTCCCCTTAGCCTGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCAAGCTGCTTCCCGGC
AAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATCGTGTCTGAGGTCTCGACCTCCAGTGTGATG
GTCTTTCCAGTAAGGGTCTTCACAAAGATCTGCATGCCACCCCTGAGCCTGAGCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCAGCGAGTG
TCCGCCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGT
GTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTCACAAAGATCTGCATCTGCAGAGACAAAAATCACATGGTAAGCTACCATAAA
GAGAAAGGCGCTGAAAAAACTAGTGCTTTGAAAAGAATGGTTCAAATCTCAACTATGAAACAGTGGTACCAACAAACGGAG