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Detailed information on CNT30444717


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678663Saccharum spontaneumSetaria viridis48.0247.492.16255forward
CNT3021397Saccharum spontaneumCitrullus lanatus22.4117.9881.51119forward
CNT30597037Saccharum spontaneumOryza meridionalis33.7134.1695.53179forward

Expression of CNT30444717

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MPSPTYQCTNARLAYMRSNLLLMRENTSTTLVELEIMHTARCTLARSAPGTTV

>peptide 2 (53 aa)
PVRSSLTTRSNNVKKGDRPIKETRNKQTLESTHNISLEPTGLKRDTSIMTCNY*

>peptide 3 (41 aa)
RPLVTYNPIKQREKRRSSHQGNEEQTNPRKYTQYIFGTNRA*

>peptide 4 (31 aa)
MARQPNRFMQADQYSSSSSPSSPPPSAATSS*

Sequence

>CNT30444717
CCCGTCCGCTCGTCACTTACAACCCGATCAAACAACGTGAAAAAAGGAGATCGTCCCATCAAGGAAACGAGGAACAAACAAACCCTCGAAAGTACACACA
ATATATCTTTGGAACCAACAGGGCTTAAGCGAGATACTTCAATTATGACATGCAACTACTAGAGCAGTTCAACAAGTGACCCAAGGTGCAAACGCAAAAG
GTTTTTTTTTGGCACCGCAACATGGCTCGACAGCCAAACAGATTCATGCAAGCAGATCAGTACTCCTCGTCCTCCTCACCGTCATCACCGCCGCCCTCGG
CAGCAACCTCCTCGTAGTCCTTCTCCAGGGCGGCCAGGTCCTCGCGTGCCTCGGAGAACTCCCCCTCCTCCATGCCCTCGCCGACGTACCAGTGCACGAA
CGCGCGCTTGGCGTACATGAGGTCGAACTTGCTGTTGATGCGGGAGAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCGCGCTGCACC
TTGGCGAGGTCGGCCCCAGGCACCACCGTCG