Detailed information on CNT30444611


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369810Saccharum spontaneumOryza glumipatula9.1228.6291.1479forward

Expression of CNT30444611

Peptides detected in this lncRNA

>peptide 1 (35 aa)
CIYMLYVCQYLPIYVFTYACMYVSLMFSLQRGKEK*

>peptide 2 (74 aa)
LAYICYMYASIYQYMYLRMHVCMCLLCLVYREGKKNEYKENWYTRTKTGKCKTEKQKSVTKQLYTSYLPLLYTN*

Sequence

>CNT30444611
CTTGCATATATATGCTATATGTATGCCAGTATTTACCAATATATGTATTTACGTATGCATGTATGTATGTGTCTCTTATGTTTAGTTTACAGAGAGGGAA
AGAAAAATGAGTACAAGGAAAATTGGTACACCAGAACAAAAACCGGCAAATGCAAAACAGAGAAGCAAAAAAGTGTGACTAAACAATTATACACTTCCTA
TCTTCCTTTGCTGTATACAAATTAATTATCCTTAACCCCCCAACAATAATGCCTAACAAAAGGAATTAATCTGCTAGCTAAGTAAATTAAGAATCATCTG
GGAAGAAGACGACCAAGGAGGAGGCGGTTTTGATGATCTCATTTTCATATATCCCATCCCATTCATCACCTCCAGGCACCATGCAAATTTTCTCTTTCTA
GATGTTCATCTCTCTCTCTGTCTAGCACCCTGTCTCTCTCCTCTGGTTACTGTTTTCTCTCTCTCTCTTTCCTCGATCCGTACTCTTCCAAATGCATGAT
GCGCGCATGCATGCATGCATGCATGAGCCATGAAAGGTGATGTAGCGATGTGTGTTAAGCATCAACAACCGCTGTAGTCTCTCAAGGAGAACCGCCCGGT
GCCGTCGGGCCCGGCGTTGCCGGTGCCGGCGTGCTGCAGCGGGCCCGTACCGCACCCTCACCCCGGGCTCGAACCGCCCGTACAAGTCGTCCGCGCCACC
GCCCACGTGCGCGTCGCCGCCGAGGAGCTCCACCGGGTCGATCCCGACGAACGCCGCGTCCGCAGCCGAGGGACCCGCGGCGCCCGGGTCGGGCTTGTGG
GGCATCATCACCCCGGGCACCGTGCCGTGCTGCTGTTGCTGTTGCGGGAGCTGCGCTGCGCCGGTG