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Detailed information on CNT30444512


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100313Saccharum spontaneumOryza rufipogon12.5348.2584.55110forward

Expression of CNT30444512

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MWFNSQHRIPRPSNFLRVLSKMVHNITRKTLRYHASH*

>peptide 2 (37 aa)
MLTCGVATSNLCFFYDSSKLVIPVSDPSFLYVLFSSQ*

>peptide 3 (34 aa)
MFFYRIISYIFRVTEFLNTKLRFMHVVQQSTQDS*

Sequence

>CNT30444512
TTTCTAACGAACCGCCATCATTTATTTAAAAAAGTTGCTTATACCTAAGCACTGACTTGGCAATTCCATTGCAGTGGGTTCTGGCCAACACTTGCTGTGT
TCTTGCAGAGGATTCCTATCATTGGCTGGATTTTCCAACAACCATTTGTGACATCGTTCCTTGACCGCTACAGAGGAAAACGTGTTCCGGTCTAGCAACC
TTTTGCTCTATATATGCTTACTTGCGGTGTAGCAACTAGCAACCTGTGTTTTTTTTACGACAGTAGCAAACTGGTTATACCGGTGTCTGATCCTTCATTT
TTATATGTTTTGTTTAGTTCCCAATAGGATTGTTCCTTGTAAATTACAGCCCCAAACTGGCCAAACCAAAGCTCCATTCCTTTGAGACCAGGATGCAGGC
TCACCCATGAAATGGATCTGTTGAAGAATCTCTTCAGCTTTGTCGAGAGCATTGACTCTGAAAGAAAAAGCTAATATGTTCTTTTATAGGATAATAAGTT
ATATATTTCGTGTGACAGAATTTCTGAACACAAAATTGCGGTTCATGCATGTGGTTCAACAGTCAACACAGGATTCCTAGACCCTCCAATTTCTTAAGGG
TTTTATCTAAAATGGTTCACAATATAACTAGGAAAACCTTAAGATATCACGCGAGTCACTGAACATGCTAGTTTGATGTATCTCATTTGGTATATTAACT
ATATTTGTATCTGACAATCAACATTTTATTGTGAGGGAGAATAACAAATTCTAACTCTGCATTTTTGGCAAAATCACAAGACAGAAACCGCCATCTATTT
TATGGTCTTGGAGATGGAAGATAAGAGGTCACCCTCCCTGTTTTGAGTGGGTGCTTGCAAGGTCAAAGCAGATAAATG