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Detailed information on CNT30444291


BLAST search results

BLAST vs Swiss-Prot:
sp|P19954|PRSP1_SPIOL, E-value = 4e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224095Saccharum spontaneumHordeum vulgare9.5837.6589.2593forward
CNT30342600Saccharum spontaneumEragrostis tef18.6450.8486.19181forward
CNT30362117Saccharum spontaneumSorghum bicolor5.1520.2410050forward
CNT30595873Saccharum spontaneumOryza meridionalis10.7123.1191.35104forward
CNT30579095Saccharum spontaneumEchinochloa crusgalli20.9130.9587.68203forward
CNT30558870Saccharum spontaneumPanicum hallii13.3924.986.15130forward

Expression of CNT30444291

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MMAHRREGPVPGHPHRHGHGDAAAGVVHGHRHRGQPAAQEARAEGHRSSTAARMAVASDCGRGGRGHCGCRGGRHGCFLPCSLLFL*

>peptide 2 (54 aa)
MPMHETETDGDEMSTSSRWSLFYITYSSKQAKQVLKDALFFPPWLLLSAAVCTA*

>peptide 3 (31 aa)
MKLKLMEMRCRRVLGGVCFTLHTVASKQSKY*

>peptide 4 (46 aa)
MLSFFPLGYCCRRRCARRRTAPEQRRLVAAQRQRCPCCRRCRPPWG*

Sequence

>CNT30444291
TACTAGTAGCAGGAGTACAACAGAGTATGAAATGAAGGGGAGTTAACTTGAGCAGTGTGTGAGTAGACACAGACAGACGGACACAGCCATATGCCAATGC
ATGAAACTGAAACTGATGGAGATGAGATGTCGACGAGTTCTAGGTGGAGTTTGTTTTACATTACATACAGTAGCAAGCAAGCAAAGCAAGTACTAAAAGA
TGCTCTCTTTTTTCCCCCTTGGCTATTGTTGTCGGCGGCGGTGTGCACGGCGTAGGACGGCTCCGGAGCAGCGGCGGCTGGTGGCGGCGCAACGCCAACG
GTGTCCTTGTTGTCGACGTTGCCGTCCTCCTTGGGGATGATGAGGCCGTAGCCGCCTTCTTTCCTGCGGTAGACGATGTTGACCTCGCCCGTTGCCTCGT
CCCTGAAGCAGTAGAAGTTGTGGCCCACGTTCTCCAGCTGCTCCAGCGCCTCCTCCACCGTCAGCGGCGGCATCTCGAACACCTTGGTGCGCACCACCTT
GGCGAGCACCGTCTGCTCGTCCTCCGCGCCCACGGCCGCAGCCAGGTCCTGCTCCTCGGCCTCCAAGAGCGGGAGCGGGAGCGGGAGCGGGACGTCGTCC
TCCCAGCCGTCGCCGTCGCTGTCACCGTGGCGCCGCACCTCCGTCTCCTTCTCCTTGATCTTGCGGAGCTTGCGCTTGATGATGGCGCACCGACGAGAGG
GGCCCGTCCCAGGCCATCCGCACCGACACGGGCACGGAGACGCGGCGGCGGGGGTCGTCCACGGCCACCGGCACCGCGGCCAGCCCGCGGCCCAGGAAGC
CCGAGCGGAGGGCCACCGAAGCAGCACGGCAGCGAGGATGGCCGTGGCGAGCGATTGCGGCCGAGGGGGACGGGGACATTGCGGTTGCCGCGGCGGCCGC
CATGGTTGCTTTCTTCCTTGCTCTCTTCTGTTTCTTTGAACGGACAGACGAAAAGGGGATGAGGATTCCTC