Detailed information on CNT30444216


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678279Aegilops tauschiiSetaria viridis80.7947.5595.83408forward
CNT30539441Aegilops tauschiiBrassica napus69.77.284.94352forward
CNT3059817Aegilops tauschiiArabidopsis lyrata69.761.0185.51352forward
CNT30627897Aegilops tauschiiDaucus carota27.139.186.13137forward
CNT30477828Aegilops tauschiiArabidopsis halleri50.6950.2988.28256forward
CNT30622174Aegilops tauschiiCajanus cajan27.7219.2387.86140forward
CNT30578317Aegilops tauschiiOryza barthii61.9864.6793.61313forward

Expression of CNT30444216

Peptides detected in this lncRNA

>peptide 1 (33 aa)
AFHTSQAAASSGLHLQAARIISLPSRARSRPSL*

Sequence

>CNT30444216
TCGCCTTCCATACTTCACAAGCTGCGGCTAGTTCAGGACTCCATTTGCAAGCTGCTCGGATAATTTCATTACCTTCGCGAGCAAGATCGCGCCCTTCGTT
ATGAGCTTGTACACAGGCTTCTAAAGCCACTCGATTAGCTGCTGCACCAGTCCTGAGTGAAAAAGATACCGCGAGCACGATCTTTTTCAATAAAATCATC
GCGCAATAAATCAACAAAACCTAAAGTCATTTCGCGTTCCCCTTCTAACTTACCTACTACTTTACCGGAGTGGATATGATCTCCCCCAGACATACGCAAT
GCTTTAGCTAATACACGGAAATGCATACCATGATTTTTCTGTCTATCAATAACTGCATGTATTGCACGGTGAATGTGAAGAAGTAGTCATGCATTACAAT
AGGAACCCCTAATTCTCTTGCAAATATAGCTCTCTTAATCATTTCTTCACATGTACCCGCAGTCACATTCAAGTAATGCCCCTTGATTTCACCGGTTTCG
GCCTG