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Detailed information on CNT30444212


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678839Aegilops tauschiiSetaria viridis69.0265.5598.78898forward
CNT30519050Aegilops tauschiiJuglans regia69.0279.8295.77898forward
CNT30619379Aegilops tauschiiSesamum indicum59.5799.3695.1775forward
CNT30200729Aegilops tauschiiPisum sativum69.0236.9295.32898forward
CNT3048154Aegilops tauschiiPrunus dulcis69.0285.6195.66898forward
CNT30194361Aegilops tauschiiSecale cereale65.869.7695.68856reverse complement
CNT30308821Aegilops tauschiiTriticum aestivum65.9554.6899.3858forward
CNT30224448Aegilops tauschiiHordeum vulgare60.4299.3798.22786forward
CNT30544510Aegilops tauschiiBrassica napus69.0256.1295.43898forward
CNT30239033Aegilops tauschiiBrassica oleracea69.0266.1395.32898forward
CNT30261854Aegilops tauschiiBrassica rapa67.4982.3695.33878forward
CNT3010382Aegilops tauschiiZea mays69.4996.7995.24904reverse complement
CNT30206557Aegilops tauschiiHelianthus annuus62.8737.9295.72818forward
CNT30365254Aegilops tauschiiSorghum bicolor68.6498.6797.2893forward
CNT30413997Aegilops tauschiiPapaver somniferum51.8180.7295.55674forward
CNT3036408Aegilops tauschiiCucumis melo68.9584.8696.32897forward

Expression of CNT30444212

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MRPSQKSGFVARISSRITTVIRVARTIKQTITDLMSHSQFHSSNWFILAHAWLNL*

>peptide 2 (30 aa)
MMRRRHEGRAIRRVIMNHRISEQSPRQPFI*

Sequence

>CNT30444212
CAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG
AAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA
GACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGCTGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGA
GGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGT
CAATCCTTGCTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGC
TCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAT
GCGTCGCCGGCACGAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCGGATCAGCGAGCAGAGCCCGCGTCAGCCTTTTATCTAATAAATGCGCCCC
TCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCACGTACCATCAAACAAACTATAACTGATTTAATGAGCC
ATTCGCAGTTTCACAGTTCAAATTGGTTCATACTTGCACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGCACG
TCCTTGGTGACGCCCAGCACGACCATCGTCCTGCGCTTCCACTTTCGTGGAAACTCAGAGGCAACAGCCGGGCCGGTTGTCGCTCTTGAGCGGCATAGCT
CATCCTCCTTGAGGATCGGCGCAGAGAGTCGCATATCCTACCACGTAACTGTGGAGAGGTAGAGGCAACTCCTGTTCCGGTTGTTCTCAATTCAGAGAGC
TTTGGGTCGGGTCGAGGCAACCGAAAGGGCCACGACCCTTTATCGTCAGCAGCATCCGATACCAAAAGCGGGAGCGAGGATGCCTTGATAGCAGCGGGCA
CGTAACGTGCCAGCGCCACGAGGCAACGCCGCAAGCGCTATTTGGCCGCAGCGGCACACCCAAAGGGCGTCCGCCGCGAGGCAACAATTATCCGAAGCGC
C