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Detailed information on CNT30444120


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42842|NLT43_HORVU, E-value = 5e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676294Aegilops tauschiiSetaria viridis14.0324.1288.7162forward
CNT30182250Aegilops tauschiiSecale cereale34.3925.9482.89152forward
CNT30389829Aegilops tauschiiTriticum turgidum20.1414.2489.8989forward
CNT30471439Aegilops tauschiiSaccharum spontaneum14.0323.3190.3262forward
CNT30682526Aegilops tauschiiTriticum urartu47.2940.1986.6209forward
CNT30371496Aegilops tauschiiOryza glumipatula18.7827.8586.7583forward
CNT30104730Aegilops tauschiiOryza rufipogon18.7824.286.7583forward
CNT30578036Aegilops tauschiiOryza barthii18.7827.8586.7583forward
CNT30117813Aegilops tauschiiOryza nivara18.7820.1986.7583forward

Expression of CNT30444120

Peptides detected in this lncRNA

>peptide 1 (34 aa)
PNIVSVDGWHYRRRPWWPVVDQRILEQSTDELMA*

>peptide 2 (81 aa)
MLTPHLEGMPAAFPALSPPAALLMHLHAACLSAVLRAAPARLLTPLQQEMQGLKAELTWPQEIAASVAVRTIAATRVNNTS*

Sequence

>CNT30444120
CCCGAACATAGTTAGTGTCGATGGATGGCACTATAGGCGGCGACCATGGTGGCCAGTGGTTGATCAGCGAATCTTAGAGCAGTCCACGGATGAGCTAATG
GCGTAGGGGATGCTGACGCCGCACTTGGAGGGGATGCCAGCGGCCTTTCCAGCGTTGAGCCCACCAGCAGCACTCTTAATGCACTTGCACGCCGCTTGCT
TGTCAGCGGTGCTCCGCGCTGCGCCGGCCAGACTCCTGACACCACTGCAGCAGGAGATGCAGGGGCTCAAGGCAGAGCTCACCTGGCCACAGGAGATTGC
AGCGTCTGTGGCTGTGAGGACCATTGCTGCCACGAGGGTGAACAACACGAGTTGAGCAGCTGCAGCACGGGCCATCTTGATCAAGCTAGCAATAGTAGTA
GTGCTGAGCTCAGATGTAGATGATGAGATGGATGGACTTGCT