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Detailed information on CNT30443963


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671156Aegilops tauschiiSetaria viridis10.0324.6382.24214reverse complement
CNT30186352Aegilops tauschiiSecale cereale14.6770.1893.93313forward
CNT30221938Aegilops tauschiiHordeum vulgare13.3633.6989.82285forward
CNT30392272Aegilops tauschiiTriticum turgidum47.3392.5896.831010forward
CNT30469901Aegilops tauschiiSaccharum spontaneum4.8345.3790.29103forward
CNT3013906Aegilops tauschiiZea mays8.233.5281.71175reverse complement
CNT30679204Aegilops tauschiiTriticum urartu12.1821.7283.85260forward
CNT30595478Aegilops tauschiiOryza meridionalis5.7622.9590.24123forward
CNT30370294Aegilops tauschiiOryza glumipatula17.7144.7385.98378reverse complement
CNT30101709Aegilops tauschiiOryza rufipogon17.3929.3384.64371reverse complement
CNT30117499Aegilops tauschiiOryza nivara10.1260.3488.43216reverse complement

Expression of CNT30443963

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MLRFKGLTVDQLCSENVAAKTKTKLALNMVKRPERQKQTAINHSSCLHCISCSRCGPFATTKYLHLTLL*

>peptide 2 (60 aa)
CEAEYIAASTACTQALWLARDCLVIFSFKTPERCSSWWTASPPWPWQRTPCSTNGASTSD*

>peptide 3 (42 aa)
MTISHSAFEFQHCNLRTSYVNFLCRCGPIAITNISSLHFCKS*

Sequence

>CNT30443963
CTGTGAGGCTGAGTACATAGCGGCCTCCACCGCCTGCACTCAGGCGCTCTGGCTCGCTCGCGACTGCTTGGTGATCTTCTCGTTCAAGACACCAGAACGG
TGCAGCTCCTGGTGGACAGCAAGTCCGCCCTGGCCCTGGCAAAGAACCCCGTGTTCCACGAACGGAGCAAGCACATCCGACTGAGGTATCACTTCATCCG
CAGCTGTGTGGAAGAAGGGAGCATTGAGGCGAGCTACATCAACACCACGGATCAGCTCGCAGACCTGCTCACCAAGCCTCTTGGGAGGGTCAAGTTCCTC
GAACTTTGCTCCAGGATTGGGATGATTCAACTCTCCCACAAGACGACGTACAAGACTTAGGGGGAGAATGATGGATAAGTCTGTGTACTAGGGTCGTTGT
GGGGCTGCAGCACATGGTCCTTGTGGCAGTTAGGATAGAGTTCCTGACCATCAAGGACTGTCAGTTAGGATAGCATCTTAGACTGGCATCTTAGACTAGC
ATCTTGGACTGGCATCTTAGCAGCATCTCAGCATATGCTTGGCTGGCTAGCAGCCTATAAGTATGTAACCCCAACCCCTCAGGTTGGCATGGCATTGTGC
GAGAAATAAACCAACGAAAATTGTCCCAACTCTCCTAGCGTCATCCACAACTATCAATGCTTAGGTTCAAAGGTCTAACAGTGGACCAGCTTTGCTCTGA
GAATGTCGCTGCAAAAACCAAAACAAAACTTGCTCTGAATATGGTCAAGAGACCTGAGAGACAAAAACAAACAGCAATAAATCACAGCAGTTGTCTTCAT
TGTATTTCTTGCAGTAGATGTGGTCCATTTGCTACCACCAAATACCTGCATCTTACACTTCTGTAAACGTAGAGTTTTTTACTCCGCAATGACCATTTCA
CATTCAGCATTTGAATTTCAACATTGCAATCTGCGAACCTCTTATGTAAACTTCTTGTGTAGATGTGGTCCAATTGCTATCACCAATATCTCCAGCTTAC
ACTTCTGTAAATCGTAGACTTTCTTTTTACTCTGCAGCGATTCCTCCACATCCAGCACAGAGCATTTGAAAATGAAAATTACATTAGCATCTGCAAATGT
CTTACTGTGTTTTGCTCTTGTTTACAGGGTTCCACCAATGCAGCCCACGAGATGAATATATGAGTATATGAGCTACTGTATGTTTTAGTAGATATATACA
AATCAATGTGAATTCTGAACTGAGCGACCCATGAGTTCATCCATACAAATATGTGAATTCTGAACTGAGCGACCCATGAGTTCATCCATACAAATATTCA
TCTCGACAGTCCACTGTTTTCTACAGTAGTAGTTATTTTAGTTTTCACACATCGGTTATTCTGAATTCCCAGTCACAGCAGCTGGAAGATGGAGCCTGAT
CAGAGTGGCACCGGGCAGACTTCTCCCCGTGGGAATGACTGAGAGGTCGTGCAGCTCACCGCGTGGCCTGCCTAGGGTTTCTGGTGGCTACACGCCGGCC
ATGGGTCTCCGAACACCATGAAGGCGACGGTGCTGATTCGATTTGATCCTCAAGGCCACCCATGGATCTTGCTGCAGGAGGTGTGTTTTGGAGAACCAAC
CTGAGATGCAGGAGGTGGGTTCTTGGGCCGTGCTCTGCTCGAGGATGAGGGCCATGAGGGGTTTGCTCCTCTGCCCCTAGGGCGACCAAGAGGTCCTGCC
CCGAGCTCAAGCACGTCCACGCCGACCCACGACAACACGTCCATAACAGCTCGCTCAATCAGTATTGGCTGTGACGTCGACGGAGAACTAAACCTTGCTG
CCACACTCTGCAACATCAACAGGTGCCTTCGTTCGGACTCTACGGACATACCCGAAAATGGTGTTCCCTCTCATTTACAGGAGCTCTAGTCTGGAAGTGA
AGTAGGAAGTATATTTGAAGTTCAAGGCCGTGTAGCAAATAGTTGTATGTTTTGTCTATGTGTAATAGACTGTACATATTGTAATAGACTATGTACAGAT
TATAGTAGACTAATTTAGTGTTCTTTGATGAACTGCATTTGTTATGTTCTGTTTGAAATAATGATTATGTGATTTGAAAAAATCAGTGAAATGGAAACCC
GGCTCGTGGGACCAACTTATGAAAATAATCTGAG