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Detailed information on CNT30443838


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 4e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618329Aegilops tauschiiSesamum indicum21.588.4383.65104forward
CNT30364747Aegilops tauschiiSorghum bicolor28.4215.3494.16137forward
CNT30596416Aegilops tauschiiOryza meridionalis25.5227.0995.12123forward
CNT30101982Aegilops tauschiiOryza rufipogon31.1227.5294.67150forward
CNT30576681Aegilops tauschiiOryza barthii33.8228.0694.48163forward

Expression of CNT30443838

Peptides detected in this lncRNA

>peptide 1 (88 aa)
HKETQLKNSQTPPTSQHHILQIKEHASSSYSFDLNQTTGCSSHHRDIRETAHHVRTFYVAEGIMDRTTLPMAGLVVVAGDGAVVVAHV*

>peptide 2 (33 aa)
MSGMLAPTMKPMAMGAMVPRDPFLGSAAVAYTV*

Sequence

>CNT30443838
GCATAAGGAAACTCAACTGAAGAATTCTCAAACCCCACCAACTTCACAACATCACATTTTACAGATAAAGGAACATGCATCATCCAGCTACAGCTTCGAT
CTGAACCAAACAACAGGATGTTCTTCACATCATCGAGACATTCGTGAGACTGCCCACCACGTACGCACTTTTTATGTTGCCGAAGGCATTATGGACCGAA
CGACTCTTCCCATGGCTGGCTTAGTAGTCGTTGCCGGCGACGGGGCTGTGGTCGTCGCACATGTATAGGTATCGGTAGACGACGCCGGCGAGGCCACCGC
CGATGAGCGGGATGTTGGCGCCGACGATGAAGCCGATGGCGATGGGGGCGATGGTGCCGAGGGATCCCTTCTTGGGGTCGGCGGCGGTGGCGTACACGGT
GTAGACGAGCCCGAAGGTGACGATGATCTCCATCACGACGCCCTCAAAGGCGCCCACGCCGGAAAGCCCGTGTGTAGGGGTG